Slep10 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Slep10 (Serum leptin concentration QTL 10) Rattus norvegicus

Symbol: Slep10
Name: Serum leptin concentration QTL 10
RGD ID: 9589093
Trait: blood leptin amount   (VT:0005667)    
Measurement Type: plasma leptin level   (CMO:0000781)    
LOD Score: 3.84
P Value: 0.001
Variance: 6.1
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02102,356,980 - 147,356,980RGD_MAPPER_PIPELINERnor6.0
Rnor_5.02121,970,291 - 166,970,291RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.42102,201,229 - 147,201,229RGD_MAPPER_PIPELINERGSC3.4
Cross Type: intercross
Strains Crossed: F344/IcoCrlf LOU/NimrOlaHsd 



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain

References

References - curated
# Reference Title Reference Citation
1. Quantitative Trait Loci Influencing Abdominal Fat Deposition and Functional Variability of the HPA Axis in the Rat. Marissal-Arvy N, etal., Horm Metab Res. 2014 Jul 8.

Region

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
Position Markers

Peak: (D2Mit30)
Rat AssemblyChrPosition (strand)Source
Rnor_6.02124,856,936 - 124,857,025NCBI
Rnor_5.02144,470,247 - 144,470,336UniSTS
RGSC_v3.42124,701,108 - 124,701,350RGD
RGSC_v3.42124,701,109 - 124,701,350UniSTS
RGSC_v3.12124,651,026 - 124,651,267RGD
Celera2115,941,651 - 115,941,892UniSTS
RH 3.4 Map2672.6UniSTS
RH 3.4 Map2672.6RGD
RH 2.0 Map2617.1RGD
Cytogenetic Map2 RGD


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general confidence interval 10.2-38.1 Mb 8694157
qtl_general number of animals used: 93 F2 males and 94 F2 females 8694157
qtl_general measurement method: at the end of the HPA axis function experiment, animals were fasted overnight, blood samples collected on EDTA, centrifuged at 4000g, plasma extracted and plasma leptin level measured in triplicate with RIA kit (Linco Research, St Charles, MO, USA) 8694157
qtl_general software package used: MultiQTL software 8694157