GWAS1954526_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1954526_H (body weight QTL GWAS1954526 (human)) Homo sapiens

Symbol: GWAS1954526_H
Name: body weight QTL GWAS1954526 (human)
RGD ID: 616557943
Trait: body weight
LOD Score: Not Available
P Value: 2.0E-15
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38915,647,350 - 15,647,351RGD_MAPPER_PIPELINEGRCh38
GRCh37915,647,348 - 15,647,349RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)



References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1348779CCDC171coiled-coil domain containing 17191555288516108926Human

Position Markers

Peak: (rs9776097)
Human AssemblyChrPosition (strand)Source
GRCh38915,647,350 - 15,647,351RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
616519391GWAS1915974_Hbody mass index QTL GWAS1915974 (human)9e-24body mass index91564735015647351Human
628689882GWAS2598111_Hbody mass index QTL GWAS2598111 (human)6e-24body size trait (VT:0100005)body mass index (BMI) (CMO:0000105)91564735015647351Human
407306497GWAS955473_Hbody mass index QTL GWAS955473 (human)2e-16body mass index91564735015647351Human
596966066GWAS1085585_Hbody mass index QTL GWAS1085585 (human)6e-24body mass index91564735015647351Human
1357299AASTH47_HAllergic/atopic asthma related QTL 47 (human)0.00028Reversible airflow obstruction9528914931289149Human
598085793GWAS1805092_Hobsolete_fat body mass QTL GWAS1805092 (human)4e-18obsolete_fat body mass91564735015647351Human
628432338GWAS2340567_Hbody mass index QTL GWAS2340567 (human)9e-26body size trait (VT:0100005)body mass index (BMI) (CMO:0000105)91564735015647351Human
616557943GWAS1954526_Hbody weight QTL GWAS1954526 (human)2e-15body weight91564735015647351Human
628835729GWAS2743958_Hbody mass index QTL GWAS2743958 (human)9e-24body size trait (VT:0100005)body mass index (BMI) (CMO:0000105)91564735015647351Human
628668596GWAS2576825_Hfat pad mass QTL GWAS2576825 (human)4e-18fat pad mass91564735015647351Human
628664823GWAS2573052_Hbody mass index QTL GWAS2573052 (human)2e-16body size trait (VT:0100005)body mass index (BMI) (CMO:0000105)91564735015647351Human
407308309GWAS957285_Hfat body mass QTL GWAS957285 (human)4e-18fat body mass91564735015647351Human
597316456GWAS1412530_Hbody mass index QTL GWAS1412530 (human)6e-24body mass index91564735015647351Human
1643245BW137_HBody weight QTL 137 (human)2.28Body weight9528914931289149Human
597133827GWAS1229901_Hfat body mass QTL GWAS1229901 (human)4e-18fat body mass91564735015647351Human
2302773MAMTS18_HMammary tumor susceptibility QTL 18 (human)0.039Mammary tumor susceptibility9528914931289149Human
597349474GWAS1445548_Hbody mass index QTL GWAS1445548 (human)2e-16body mass index91564735015647351Human
2315898GLUCO191_HGlucose level QTL 191 (human)1.83Glucose level9528914931289149Human
2293400PRSTS224_HProstate tumor susceptibility QTL 224 (human)1.62Prostate tumor susceptibility9528914931289149Human
628697859GWAS2606088_Hbody weight QTL GWAS2606088 (human)2e-15body mass (VT:0001259)body weight (CMO:0000012)91564735015647351Human
2293433PRSTS223_HProstate tumor susceptibility QTL 223 (human)1.6Prostate tumor susceptibility9528914931289149Human
407016057GWAS665033_Hbody mass index QTL GWAS665033 (human)9e-26body mass index91564735015647351Human
597100617GWAS1196691_Hbody mass index QTL GWAS1196691 (human)9e-26body mass index91564735015647351Human
598099065GWAS1816458_Hfat pad mass QTL GWAS1816458 (human)4e-18fat pad mass91564735015647351Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS2340567_H GCST009871 Body mass index 457,822 European ancestry individuals ? NR 9E-26 25.046 rs9776097 N/A body mass index (EFO:0004340)
 PMID:31669095
GWAS2573052_H GCST90428119 Body mass index 342,566 European ancestry individuals T NR 2E-16 15.699 rs9776097 0.0199048 body mass index (EFO:0004340)
 PMID:38538606
GWAS2576825_H GCST90428121 Whole body fat mass (UKB data field 23100) 337,196 European ancestry individuals T NR 4E-18 17.398 rs9776097 0.0206729 fat pad mass (OBA:0004528)
 PMID:38538606
GWAS2598111_H GCST90435413 Body mass index 403,610 European ancestry individuals ? NR 6E-24 23.222 rs9776097 0.0210798 body mass index (EFO:0004340)
 PMID:39134668
GWAS2606088_H GCST90468183 Weight (UKB data field 21002) 394,642 European ancestry individuals T 0.44014883 2E-15 14.699 rs9776097 0.01287501 body weight (EFO:0004338)
 PMID:39789286
GWAS2743958_H GCST90468161 Body mass index (UKB data field 21001) 394,642 European ancestry individuals T 0.44014883 9E-24 23.046 rs9776097 0.018473923 body mass index (EFO:0004340)
 PMID:39789286
Database Acc Id Source(s)
GWAS Catalog GCST90468183 GWAS Catalog

RGD Curation Notes
Note Type Note Reference