GWAS1611855_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1611855_H (SARS-CoV-2 antibody measurement, response to COVID-19 vaccine QTL GWAS1611855 (human)) Homo sapiens

Symbol: GWAS1611855_H
Name: SARS-CoV-2 antibody measurement, response to COVID-19 vaccine QTL GWAS1611855 (human)
RGD ID: 597515781
Trait: SARS-CoV-2 antibody measurement, response to COVID-19 vaccine
Measurement Type: blood anti-SARS-CoV-2 antibody level   (CMO:0003966)    
LOD Score: Not Available
P Value: 3.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38179,038,687 - 79,038,688RGD_MAPPER_PIPELINEGRCh38
GRCh37179,504,372 - 79,504,373RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1611855_HHumanblood anti-SARS-CoV-2 antibody level  IAGPrs1332824405850206 GWAS_CATALOGPMID:37469131

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1611855_HHumanresponse to COVID-19 vaccine  IAGPrs1332824405850206 GWAS_CATALOGPMID:37469131
GWAS1611855_HHumanSARS-CoV-2 antibody measurement  IAGPrs1332824405850206 GWAS_CATALOGPMID:37469131
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs1332824)
Human AssemblyChrPosition (strand)Source
GRCh38179,038,687 - 79,038,688RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597515781GWAS1611855_HSARS-CoV-2 antibody measurement, response to COVID-19 vaccine QTL GWAS1611855 (human)0.000003SARS-CoV-2 antibody measurement, response to COVID-19 vaccineblood anti-SARS-CoV-2 antibody level (CMO:0003966)17903868779038688Human
2289499BW445_HBody weight QTL 445 (human)2.26Body morphometrywaist to hip ratio16853299294532992Human
2316890GLUCO302_HGlucose level QTL 302 (human)0.005Glucose level16853299294532992Human
1581539BP75_HBlood pressure QTL 75 (human)2.40.001Blood pressurepulse pressure16853299294532992Human
2292793PRSTS24_HProstate tumor susceptibility QTL 24 (human)Prostate tumor susceptibilitylate onset16853299294532992Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1611855_H GCST90256682 Response to BNT162b2 vaccine (anti-SARS-CoV-2 Spike antibody levels at four months after first dose) 868 Italian ancestry individuals ? NR 0.000003 5.523 rs1332824 N/A SARS-CoV-2 antibody measurement (EFO:0803360)
response to COVID-19 vaccine (EFO:0803362)
 PMID:37469131
Database Acc Id Source(s)
GWAS Catalog GCST90256682 GWAS Catalog

RGD Curation Notes
Note Type Note Reference