GWAS1587507_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1587507_H (response to COVID-19 vaccine, SARS-CoV-2 neutralizing antibody measurement QTL GWAS1587507 (human)) Homo sapiens

Symbol: GWAS1587507_H
Name: response to COVID-19 vaccine, SARS-CoV-2 neutralizing antibody measurement QTL GWAS1587507 (human)
RGD ID: 597491433
Trait: response to COVID-19 vaccine, SARS-CoV-2 neutralizing antibody measurement
Measurement Type: blood anti-SARS-CoV-2 antibody level   (CMO:0003966)    
LOD Score: Not Available
P Value: 7.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381859,276,950 - 59,276,951RGD_MAPPER_PIPELINEGRCh38
GRCh371856,944,182 - 56,944,183RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1587507_HHumanblood anti-SARS-CoV-2 antibody level  IAGPrs80339225405850206 GWAS_CATALOGPMID:36451823

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1587507_HHumanresponse to COVID-19 vaccine  IAGPrs80339225405850206 GWAS_CATALOGPMID:36451823
GWAS1587507_HHumanSARS-CoV-2 neutralizing antibody measurement  IAGPrs80339225405850206 GWAS_CATALOGPMID:36451823
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs80339225)
Human AssemblyChrPosition (strand)Source
GRCh381859,276,950 - 59,276,951RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597491433GWAS1587507_Hresponse to COVID-19 vaccine, SARS-CoV-2 neutralizing antibody measurement QTL GWAS1587507 (human)7e-10response to COVID-19 vaccine, SARS-CoV-2 neutralizing antibody measurementblood anti-SARS-CoV-2 antibody level (CMO:0003966)185927695059276951Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1587507_H GCST90244758 Neutral antibody levels in response to SARS-CoV-2 vaccination 168 East Asian ancestry individuals ? NR 7E-10 9.155 rs80339225 10.64 response to COVID-19 vaccine (EFO:0803362)
SARS-CoV-2 neutralizing antibody measurement (EFO:0803359)
 PMID:36451823
Database Acc Id Source(s)
GWAS Catalog GCST90244758 GWAS Catalog

RGD Curation Notes
Note Type Note Reference