GWAS1587500_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1587500_H (SARS-CoV-2 antibody measurement, response to COVID-19 vaccine QTL GWAS1587500 (human)) Homo sapiens

Symbol: GWAS1587500_H
Name: SARS-CoV-2 antibody measurement, response to COVID-19 vaccine QTL GWAS1587500 (human)
RGD ID: 597491426
Trait: SARS-CoV-2 antibody measurement, response to COVID-19 vaccine
Measurement Type: blood anti-SARS-CoV-2 antibody level   (CMO:0003966)    
LOD Score: Not Available
P Value: 1.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381682,339,985 - 82,339,986RGD_MAPPER_PIPELINEGRCh38
GRCh371682,373,590 - 82,373,591RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1587500_HHumanblood anti-SARS-CoV-2 antibody level  IAGPrs117838393405850206 GWAS_CATALOGPMID:36451823

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1587500_HHumanresponse to COVID-19 vaccine  IAGPrs117838393405850206 GWAS_CATALOGPMID:36451823
GWAS1587500_HHumanSARS-CoV-2 antibody measurement  IAGPrs117838393405850206 GWAS_CATALOGPMID:36451823
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs117838393)
Human AssemblyChrPosition (strand)Source
GRCh381682,339,985 - 82,339,986RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597491428GWAS1587502_HSARS-CoV-2 antibody measurement, response to COVID-19 vaccine QTL GWAS1587502 (human)9e-09SARS-CoV-2 antibody measurement, response to COVID-19 vaccineblood anti-SARS-CoV-2 antibody level (CMO:0003966)168233998582339986Human
597491426GWAS1587500_HSARS-CoV-2 antibody measurement, response to COVID-19 vaccine QTL GWAS1587500 (human)1e-09SARS-CoV-2 antibody measurement, response to COVID-19 vaccineblood anti-SARS-CoV-2 antibody level (CMO:0003966)168233998582339986Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1587500_H GCST90244757 Total antibody levels in response to SARS-CoV-2 vaccination 168 East Asian ancestry individuals ? NR 1E-9 9 rs117838393 12.35 SARS-CoV-2 antibody measurement (EFO:0803360)
response to COVID-19 vaccine (EFO:0803362)
 PMID:36451823
GWAS1587502_H GCST90244757 Total antibody levels in response to SARS-CoV-2 vaccination 168 East Asian ancestry individuals ? NR 9E-9 8.046 rs117838393 11.04 SARS-CoV-2 antibody measurement (EFO:0803360)
response to COVID-19 vaccine (EFO:0803362)
 PMID:36451823
Database Acc Id Source(s)
GWAS Catalog GCST90244757 GWAS Catalog

RGD Curation Notes
Note Type Note Reference