GWAS1547459_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1547459_H (Epstein-Barr virus seropositivity QTL GWAS1547459 (human)) Homo sapiens

Symbol: GWAS1547459_H
Name: Epstein-Barr virus seropositivity QTL GWAS1547459 (human)
RGD ID: 597451385
Trait: Epstein-Barr virus seropositivity
Measurement Type: serum anti-Epstein-Barr virus (EBV) antibody level   (CMO:0003143)    
LOD Score: Not Available
P Value: 7.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38632,353,495 - 32,353,496RGD_MAPPER_PIPELINEGRCh38
GRCh37632,321,272 - 32,321,273RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1547459_HHumanserum anti-Epstein-Barr virus (EBV) antibody level  IAGPrs3117117405850206 GWAS_CATALOGPMID:37164013

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1547459_HHumanEpstein-Barr virus seropositivity  IAGPrs3117117405850206 GWAS_CATALOGPMID:37164013
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
13782242TSBP1-AS1TSBP1 and BTNL2 antisense RNA 163225517332407730Human
1346663TSBP1testis expressed basic protein 163229269832371903Human

Position Markers

Peak: (rs3117117)
Human AssemblyChrPosition (strand)Source
GRCh38632,353,495 - 32,353,496RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358839MULTSCL5_HMultiple sclerosis susceptibility QTL 5 (human)Multiple sclerosis susceptibility61958431145584311Human
596969169GWAS1088688_Hsystemic lupus erythematosus QTL GWAS1088688 (human)2e-08systemic lupus erythematosus63235349532353496Human
596966737GWAS1086256_HEpstein-Barr virus seropositivity QTL GWAS1086256 (human)7e-13Epstein-Barr virus seropositivity63235349532353496Human
597451385GWAS1547459_HEpstein-Barr virus seropositivity QTL GWAS1547459 (human)7e-13Epstein-Barr virus seropositivityserum anti-Epstein-Barr virus (EBV) antibody level (CMO:0003143)63235349532353496Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
1298431RA11_HRheumatoid arthritis QTL 11 (human)0.0000024Joint/bone inflammationrheumatoid arthritis61991188340191709Human
407155850GWAS804826_HEpstein-Barr virus seropositivity QTL GWAS804826 (human)7e-13Epstein-Barr virus seropositivity63235349532353496Human
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
597398723GWAS1494797_Hsystemic lupus erythematosus QTL GWAS1494797 (human)2e-08systemic lupus erythematosus63235349532353496Human
1358857MULTSCL19_HMultiple sclerosis susceptibility QTL 19 (human)Multiple sclerosis susceptibility61958431145584311Human
1643399BMD5_HBone mineral density QTL 5 (human)2.320.0005Bone mineral density6691196032911960Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1494797_H GCST90435418 Systemic lupus erythematosus at least 1,944 East Asian ancestry cases, at least 38,864 East Asian ancestry controls ? NR 2E-8 7.699 rs3117117 0.76185423 PMID:38724181
GWAS1547459_H GCST90294322 Seropositivity for human gammaherpesvirus 4 (Epstein-Barr virus) peptide (twist_26954) 1,745 individuals ? NR 7E-13 12.155 rs3117117 7.173 Epstein-Barr virus seropositivity (EFO:0010908)
 PMID:37164013
Database Acc Id Source(s)
GWAS Catalog GCST90294322 GWAS Catalog

RGD Curation Notes
Note Type Note Reference