GWAS1547457_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1547457_H (Epstein-Barr virus seropositivity QTL GWAS1547457 (human)) Homo sapiens

Symbol: GWAS1547457_H
Name: Epstein-Barr virus seropositivity QTL GWAS1547457 (human)
RGD ID: 597451383
Trait: Epstein-Barr virus seropositivity
Measurement Type: serum anti-Epstein-Barr virus (EBV) antibody level   (CMO:0003143)    
LOD Score: Not Available
P Value: 1.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38632,692,061 - 32,692,062RGD_MAPPER_PIPELINEGRCh38
GRCh37632,659,838 - 32,659,839RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1547457_HHumanserum anti-Epstein-Barr virus (EBV) antibody level  IAGPrs3129718405850206 GWAS_CATALOGPMID:37164013

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1547457_HHumanEpstein-Barr virus seropositivity  IAGPrs3129718405850206 GWAS_CATALOGPMID:37164013
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs3129718)
Human AssemblyChrPosition (strand)Source
GRCh38632,692,061 - 32,692,062RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358839MULTSCL5_HMultiple sclerosis susceptibility QTL 5 (human)Multiple sclerosis susceptibility61958431145584311Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
597451383GWAS1547457_HEpstein-Barr virus seropositivity QTL GWAS1547457 (human)1e-13Epstein-Barr virus seropositivityserum anti-Epstein-Barr virus (EBV) antibody level (CMO:0003143)63269206132692062Human
1298431RA11_HRheumatoid arthritis QTL 11 (human)0.0000024Joint/bone inflammationrheumatoid arthritis61991188340191709Human
597450387GWAS1546461_Hanimal allergen seropositivity QTL GWAS1546461 (human)2e-12animal allergen seropositivity63269206132692062Human
597386058GWAS1482132_Hsusceptibility to hepatitis B infection measurement QTL GWAS1482132 (human)0.000006response to viral infection trait (VT:0010439)63269206132692062Human
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
597453322GWAS1549396_Hstaphylococcus seropositivity QTL GWAS1549396 (human)1e-39staphylococcus seropositivity63269206132692062Human
1358857MULTSCL19_HMultiple sclerosis susceptibility QTL 19 (human)Multiple sclerosis susceptibility61958431145584311Human
1643399BMD5_HBone mineral density QTL 5 (human)2.320.0005Bone mineral density6691196032911960Human
597450722GWAS1546796_Hstaphylococcus seropositivity QTL GWAS1546796 (human)5e-11staphylococcus seropositivity63269206132692062Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1482132_H GCST005004 Hepatitis B 1,425 European ancestry cases, 218,180 European ancestry controls ? NR 0.000006 5.222 rs3129718 0.3099 susceptibility to hepatitis B infection measurement (EFO:0008405)
 PMID:28928442
GWAS1546461_H GCST90294967 Seropositivity for meleagris gallopavo (turkey) peptide (twist_3824) 1,745 individuals ? NR 2E-12 11.699 rs3129718 7.023 animal allergen seropositivity (EFO:0803597)
 PMID:37164013
GWAS1546796_H GCST90295555 Seropositivity for staphylococcus aureus peptide (agilent_240086) 1,745 individuals ? NR 5E-11 10.302 rs3129718 6.585 staphylococcus seropositivity (EFO:0803650)
 PMID:37164013
GWAS1547457_H GCST90294322 Seropositivity for human gammaherpesvirus 4 (Epstein-Barr virus) peptide (twist_26954) 1,745 individuals ? NR 1E-13 13 rs3129718 7.44 Epstein-Barr virus seropositivity (EFO:0010908)
 PMID:37164013
GWAS1549396_H GCST90295573 Seropositivity for staphylococcus aureus subsp. aureus MRSA252 peptide (agilent_84757) 1,745 individuals ? NR 1E-39 39 rs3129718 13.179 staphylococcus seropositivity (EFO:0803650)
 PMID:37164013
Database Acc Id Source(s)
GWAS Catalog GCST90294322 GWAS Catalog

RGD Curation Notes
Note Type Note Reference