Experimental Factor Annotations Click to see Annotation Detail View
Object Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | GWAS1547148_H | Human | Epstein-Barr virus seropositivity | | IAGP | rs62404084 | 405850206 | | GWAS_CATALOG | PMID:37164013 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Experimental Data Annotations
Click to see Annotation Detail View
Clinical Measurement
References
References - curated
| # | Reference Title | Reference Citation |
| 1. | RGD GWAS Catalog Import Pipeline | RGD pipeline to import data from GWAS Catalog and create human variant and QTL records |
Region
Genes in Region
| The following Genes overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | |  |
Analysis Tools |
Position Markers
| Peak: (rs62404084) |
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QTLs in Region (GRCh38)
| The following QTLs overlap with this region. | | Full Report | | CSV | | TAB | | Printer | | Gviewer |
Additional Information
GWAS QTLs Related by Peak Marker
| Data has come from the GWAS Catalog | |
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| The highlighted row represents the current QTL |
| QTL | GWAS Catalog Study | Disease Trait | Study Size | Risk Allele | Risk Allele Frequency | P Value | P Value MLOG | Peak Marker | Reported Odds Ratio or Beta-coefficient | Ontology Accession | PubMed |
| GWAS1485872_H | GCST009717 | Hay fever and/or eczema | 84,034 European ancestry cases, 239,773 European ancestry controls | C | 0.8069 | 1E-43 | 43 | rs62404084 | 1.1116052 | Eczematoid dermatitis (HP:0000964) allergic rhinitis (EFO:0005854) |
PMID:31361310 |
| GWAS1492012_H | GCST90019001 | Medication use (antihistamines for systemic use) | 13,984 European ancestry cases, 137,652 European ancestry controls, 10,163 East Asian ancestry cases, 168,563 East Asian ancestry controls | T | NR | 5E-11 | 10.302 | rs62404084 | 0.0852 | Antihistamine use measurement (EFO:0009943) |
PMID:34594039 |
| GWAS1547148_H | GCST90294355 | Seropositivity for human gammaherpesvirus 4 (Epstein-Barr virus) peptide (twist_32572) | 1,745 individuals | ? | NR | 5E-9 | 8.302 | rs62404084 | 5.853 | Epstein-Barr virus seropositivity (EFO:0010908) |
PMID:37164013 |
RGD Curation Notes
| Note Type | Note | Reference |
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