GWAS1539466_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1539466_H (anti-SARS-CoV-2 IgG measurement, response to COVID-19 vaccine QTL GWAS1539466 (human)) Homo sapiens

Symbol: GWAS1539466_H
Name: anti-SARS-CoV-2 IgG measurement, response to COVID-19 vaccine QTL GWAS1539466 (human)
RGD ID: 597443392
Trait: anti-SARS-CoV-2 IgG measurement, response to COVID-19 vaccine
Measurement Type: blood anti-SARS-CoV-2 antibody level   (CMO:0003966)    
LOD Score: Not Available
P Value: 8.0E-9
Variance: Not Available
Position No map positions available.
Population Stats: Not Available



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1539466_HHumanblood anti-SARS-CoV-2 antibody level  IAGPrs149566899405850206 GWAS_CATALOGPMID:38181733

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1539466_HHumananti-SARS-CoV-2 IgG measurement  IAGPrs149566899405850206 GWAS_CATALOGPMID:38181733
GWAS1539466_HHumanresponse to COVID-19 vaccine  IAGPrs149566899405850206 GWAS_CATALOGPMID:38181733
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs149566899) No map positions available.


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1539466_H GCST90295945 Anti-SARS-CoV-2 spike protein IgG seronegativity after first dose of COVID-19 vaccine 37,229 European ancestry cases, 16,837 European ancestry controls C 0.199365 8E-9 8.097 rs149566899 0.89 anti-SARS-CoV-2 IgG measurement (EFO:0803358)
response to COVID-19 vaccine (EFO:0803362)
 PMID:38181733
Database Acc Id Source(s)
GWAS Catalog GCST90295945 GWAS Catalog

RGD Curation Notes
Note Type Note Reference