GWAS1417791_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1417791_H (response to COVID-19 vaccine, SARS-CoV-2 neutralizing antibody measurement QTL GWAS1417791 (human)) Homo sapiens

Symbol: GWAS1417791_H
Name: response to COVID-19 vaccine, SARS-CoV-2 neutralizing antibody measurement QTL GWAS1417791 (human)
RGD ID: 597321717
Trait: response to COVID-19 vaccine, SARS-CoV-2 neutralizing antibody measurement
Measurement Type: blood anti-SARS-CoV-2 antibody level   (CMO:0003966)    
LOD Score: Not Available
P Value: 3.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3811106,621,114 - 106,621,115RGD_MAPPER_PIPELINEGRCh38
GRCh3711106,491,841 - 106,491,842RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1417791_HHumanblood anti-SARS-CoV-2 antibody level  IAGPrs4457720405850206 GWAS_CATALOGPMID:36451823

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1417791_HHumanresponse to COVID-19 vaccine  IAGPrs4457720405850206 GWAS_CATALOGPMID:36451823
GWAS1417791_HHumanSARS-CoV-2 neutralizing antibody measurement  IAGPrs4457720405850206 GWAS_CATALOGPMID:36451823
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs4457720)
Human AssemblyChrPosition (strand)Source
GRCh3811106,621,114 - 106,621,115RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1559115SCL20_HSerum cholesterol level QTL 20 (human)3.220.001213Lipid levelLDL cholesterol11100442501126442501Human
597321717GWAS1417791_Hresponse to COVID-19 vaccine, SARS-CoV-2 neutralizing antibody measurement QTL GWAS1417791 (human)0.0000003response to COVID-19 vaccine, SARS-CoV-2 neutralizing antibody measurementblood anti-SARS-CoV-2 antibody level (CMO:0003966)11106621114106621115Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1417791_H GCST90244758 Neutral antibody levels in response to SARS-CoV-2 vaccination 168 East Asian ancestry individuals ? NR 3E-7 6.523 rs4457720 6.239 response to COVID-19 vaccine (EFO:0803362)
SARS-CoV-2 neutralizing antibody measurement (EFO:0803359)
 PMID:36451823
Database Acc Id Source(s)
GWAS Catalog GCST90244758 GWAS Catalog

RGD Curation Notes
Note Type Note Reference