GWAS1417788_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1417788_H (response to COVID-19 vaccine, SARS-CoV-2 neutralizing antibody measurement QTL GWAS1417788 (human)) Homo sapiens

Symbol: GWAS1417788_H
Name: response to COVID-19 vaccine, SARS-CoV-2 neutralizing antibody measurement QTL GWAS1417788 (human)
RGD ID: 597321714
Trait: response to COVID-19 vaccine, SARS-CoV-2 neutralizing antibody measurement
Measurement Type: blood anti-SARS-CoV-2 antibody level   (CMO:0003966)    
LOD Score: Not Available
P Value: 2.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381465,566,216 - 65,566,217RGD_MAPPER_PIPELINEGRCh38
GRCh371466,032,934 - 66,032,935RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1417788_HHumanblood anti-SARS-CoV-2 antibody level  IAGPrs7146742405850206 GWAS_CATALOGPMID:36451823

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1417788_HHumanresponse to COVID-19 vaccine  IAGPrs7146742405850206 GWAS_CATALOGPMID:36451823
GWAS1417788_HHumanSARS-CoV-2 neutralizing antibody measurement  IAGPrs7146742405850206 GWAS_CATALOGPMID:36451823
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1344316FUT8fucosyltransferase 8146535684265744121Human

Position Markers

Peak: (rs7146742)
Human AssemblyChrPosition (strand)Source
GRCh381465,566,216 - 65,566,217RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597321714GWAS1417788_Hresponse to COVID-19 vaccine, SARS-CoV-2 neutralizing antibody measurement QTL GWAS1417788 (human)0.0000002response to COVID-19 vaccine, SARS-CoV-2 neutralizing antibody measurementblood anti-SARS-CoV-2 antibody level (CMO:0003966)146556621665566217Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1417788_H GCST90244758 Neutral antibody levels in response to SARS-CoV-2 vaccination 168 East Asian ancestry individuals ? NR 2E-7 6.699 rs7146742 5.177 response to COVID-19 vaccine (EFO:0803362)
SARS-CoV-2 neutralizing antibody measurement (EFO:0803359)
 PMID:36451823
Database Acc Id Source(s)
GWAS Catalog GCST90244758 GWAS Catalog

RGD Curation Notes
Note Type Note Reference