GWAS1417786_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1417786_H (response to COVID-19 vaccine, SARS-CoV-2 neutralizing antibody measurement QTL GWAS1417786 (human)) Homo sapiens

Symbol: GWAS1417786_H
Name: response to COVID-19 vaccine, SARS-CoV-2 neutralizing antibody measurement QTL GWAS1417786 (human)
RGD ID: 597321712
Trait: response to COVID-19 vaccine, SARS-CoV-2 neutralizing antibody measurement
Measurement Type: blood anti-SARS-CoV-2 antibody level   (CMO:0003966)    
LOD Score: Not Available
P Value: 9.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382056,534,912 - 56,534,913RGD_MAPPER_PIPELINEGRCh38
GRCh372055,109,968 - 55,109,969RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1417786_HHumanblood anti-SARS-CoV-2 antibody level  IAGPrs4630823405850206 GWAS_CATALOGPMID:36451823

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1417786_HHumanresponse to COVID-19 vaccine  IAGPrs4630823405850206 GWAS_CATALOGPMID:36451823
GWAS1417786_HHumanSARS-CoV-2 neutralizing antibody measurement  IAGPrs4630823405850206 GWAS_CATALOGPMID:36451823
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1342812FAM209Bfamily with sequence similarity 209 member B205653324656536520Human

Position Markers

Peak: (rs4630823)
Human AssemblyChrPosition (strand)Source
GRCh382056,534,912 - 56,534,913RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2292864PRSTS43_HProstate tumor susceptibility QTL 43 (human)0.620.05Prostate tumor susceptibility204730303964444167Human
1300007BP29_HBlood pressure QTL 29 (human)Blood pressurehypertension susceptibility203653600562536005Human
597321712GWAS1417786_Hresponse to COVID-19 vaccine, SARS-CoV-2 neutralizing antibody measurement QTL GWAS1417786 (human)9e-08response to COVID-19 vaccine, SARS-CoV-2 neutralizing antibody measurementblood anti-SARS-CoV-2 antibody level (CMO:0003966)205653491256534913Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1417786_H GCST90244758 Neutral antibody levels in response to SARS-CoV-2 vaccination 168 East Asian ancestry individuals ? NR 9E-8 7.046 rs4630823 7.386 response to COVID-19 vaccine (EFO:0803362)
SARS-CoV-2 neutralizing antibody measurement (EFO:0803359)
 PMID:36451823
Database Acc Id Source(s)
GWAS Catalog GCST90244758 GWAS Catalog

RGD Curation Notes
Note Type Note Reference