GWAS1416861_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1416861_H (SARS-CoV-2 antibody measurement, response to COVID-19 vaccine QTL GWAS1416861 (human)) Homo sapiens

Symbol: GWAS1416861_H
Name: SARS-CoV-2 antibody measurement, response to COVID-19 vaccine QTL GWAS1416861 (human)
RGD ID: 597320787
Trait: SARS-CoV-2 antibody measurement, response to COVID-19 vaccine
Measurement Type: blood anti-SARS-CoV-2 antibody level   (CMO:0003966)    
LOD Score: Not Available
P Value: 9.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3812116,414,208 - 116,414,209RGD_MAPPER_PIPELINEGRCh38
GRCh3712116,852,013 - 116,852,014RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1416861_HHumanblood anti-SARS-CoV-2 antibody level  IAGPrs180977908405850206 GWAS_CATALOGPMID:36451823

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1416861_HHumanresponse to COVID-19 vaccine  IAGPrs180977908405850206 GWAS_CATALOGPMID:36451823
GWAS1416861_HHumanSARS-CoV-2 antibody measurement  IAGPrs180977908405850206 GWAS_CATALOGPMID:36451823
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs180977908)
Human AssemblyChrPosition (strand)Source
GRCh3812116,414,208 - 116,414,209RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298449UAE2_HUrinary albumin excretion QTL 2 (human)20.005Urinary albumin excretionurine albumin:creatinine ratio (ACR)12102836889128836889Human
1643258BW205_HBody weight QTL 205 (human)4.080.00001Body fat amountpercent body fat1296630114122630114Human
1643452BW104_HBody weight QTL 104 (human)1.890.005Body fat amountabdominal visceral12102395874128395874Human
1357361BW37_HBody weight QTL 37 (human)4.080.00001Body fat amount12102836889116423339Human
597320787GWAS1416861_HSARS-CoV-2 antibody measurement, response to COVID-19 vaccine QTL GWAS1416861 (human)9e-08SARS-CoV-2 antibody measurement, response to COVID-19 vaccineblood anti-SARS-CoV-2 antibody level (CMO:0003966)12116414208116414209Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1416861_H GCST90244757 Total antibody levels in response to SARS-CoV-2 vaccination 168 East Asian ancestry individuals ? NR 9E-8 7.046 rs180977908 10.85 SARS-CoV-2 antibody measurement (EFO:0803360)
response to COVID-19 vaccine (EFO:0803362)
 PMID:36451823
Database Acc Id Source(s)
GWAS Catalog GCST90244757 GWAS Catalog

RGD Curation Notes
Note Type Note Reference