GWAS1416854_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1416854_H (anti-SARS-CoV-2 IgG measurement, response to COVID-19 vaccine QTL GWAS1416854 (human)) Homo sapiens

Symbol: GWAS1416854_H
Name: anti-SARS-CoV-2 IgG measurement, response to COVID-19 vaccine QTL GWAS1416854 (human)
RGD ID: 597320780
Trait: anti-SARS-CoV-2 IgG measurement, response to COVID-19 vaccine
Measurement Type: blood anti-SARS-CoV-2 antibody level   (CMO:0003966)    
LOD Score: Not Available
P Value: 3.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38367,503,800 - 67,503,801RGD_MAPPER_PIPELINEGRCh38
GRCh37367,554,224 - 67,554,225RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1416854_HHumanblood anti-SARS-CoV-2 antibody level  IAGPrs12489684405850206 GWAS_CATALOGPMID:36451823

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1416854_HHumananti-SARS-CoV-2 IgG measurement  IAGPrs12489684405850206 GWAS_CATALOGPMID:36451823
GWAS1416854_HHumanresponse to COVID-19 vaccine  IAGPrs12489684405850206 GWAS_CATALOGPMID:36451823
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1312779SUCLG2succinate-CoA ligase GDP-forming subunit beta36736046067654612Human

Position Markers

Peak: (rs12489684)
Human AssemblyChrPosition (strand)Source
GRCh38367,503,800 - 67,503,801RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597320780GWAS1416854_Hanti-SARS-CoV-2 IgG measurement, response to COVID-19 vaccine QTL GWAS1416854 (human)3e-08anti-SARS-CoV-2 IgG measurement, response to COVID-19 vaccineblood anti-SARS-CoV-2 antibody level (CMO:0003966)36750380067503801Human
1331643COPD16_HChronic obstructive pulmonary disease QTL 16 (human)1.07Chronic airflow obstructionpost-BD FEV1 minus pre-BD FEV1/pre-BD FEV1 x 10034938065175380651Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1416854_H GCST90244756 IgG antibody levels in response to SARS-CoV-2 vaccination 168 East Asian ancestry individuals ? NR 3E-8 7.523 rs12489684 14.35 anti-SARS-CoV-2 IgG measurement (EFO:0803358)
response to COVID-19 vaccine (EFO:0803362)
 PMID:36451823
Database Acc Id Source(s)
GWAS Catalog GCST90244756 GWAS Catalog

RGD Curation Notes
Note Type Note Reference