GWAS1391874_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1391874_H (SARS-CoV-2 antibody measurement, response to COVID-19 vaccine QTL GWAS1391874 (human)) Homo sapiens

Symbol: GWAS1391874_H
Name: SARS-CoV-2 antibody measurement, response to COVID-19 vaccine QTL GWAS1391874 (human)
RGD ID: 597295800
Trait: SARS-CoV-2 antibody measurement, response to COVID-19 vaccine
Measurement Type: blood anti-SARS-CoV-2 antibody level   (CMO:0003966)    
LOD Score: Not Available
P Value: 2.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38630,364,369 - 30,364,370RGD_MAPPER_PIPELINEGRCh38
GRCh37630,332,146 - 30,332,147RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1391874_HHumanblood anti-SARS-CoV-2 antibody level  IAGPrs3094055405850206 GWAS_CATALOGPMID:39384777

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1391874_HHumanresponse to COVID-19 vaccine  IAGPrs3094055405850206 GWAS_CATALOGPMID:39384777
GWAS1391874_HHumanSARS-CoV-2 antibody measurement  IAGPrs3094055405850206 GWAS_CATALOGPMID:39384777
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs3094055)
Human AssemblyChrPosition (strand)Source
GRCh38630,364,369 - 30,364,370RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
597295800GWAS1391874_HSARS-CoV-2 antibody measurement, response to COVID-19 vaccine QTL GWAS1391874 (human)2e-10SARS-CoV-2 antibody measurement, response to COVID-19 vaccineblood anti-SARS-CoV-2 antibody level (CMO:0003966)63036436930364370Human
1358839MULTSCL5_HMultiple sclerosis susceptibility QTL 5 (human)Multiple sclerosis susceptibility61958431145584311Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
596959085GWAS1078604_HSARS-CoV-2 antibody measurement, response to COVID-19 vaccine QTL GWAS1078604 (human)2e-10SARS-CoV-2 antibody measurement, response to COVID-19 vaccine63036436930364370Human
1298431RA11_HRheumatoid arthritis QTL 11 (human)0.0000024Joint/bone inflammationrheumatoid arthritis61991188340191709Human
1358857MULTSCL19_HMultiple sclerosis susceptibility QTL 19 (human)Multiple sclerosis susceptibility61958431145584311Human
1643399BMD5_HBone mineral density QTL 5 (human)2.320.0005Bone mineral density6691196032911960Human
597177639GWAS1273713_Hhemoglobin measurement QTL GWAS1273713 (human)8e-21blood hemoglobin amount (VT:0001588)hemoglobin measurement (CMO:0000508)63036436930364370Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1273713_H GCST90258653 Hemoglobin concentration 52,141 European ancestry females C 0.2257 8E-21 20.097 rs3094055 0.03689 hemoglobin measurement (EFO:0004509)
 PMID:35964923
GWAS1391874_H GCST90448694 Seroconversion induced by two doses of COVID-19 vaccine 30,455 European ancestry cases, 12,054 European ancestry controls G 0.77 2E-10 9.699 rs3094055 0.89 SARS-CoV-2 antibody measurement (EFO:0803360)
response to COVID-19 vaccine (EFO:0803362)
 PMID:39384777
Database Acc Id Source(s)
GWAS Catalog GCST90448694 GWAS Catalog

RGD Curation Notes
Note Type Note Reference