GWAS1391872_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1391872_H (SARS-CoV-2 antibody measurement, response to COVID-19 vaccine QTL GWAS1391872 (human)) Homo sapiens

Symbol: GWAS1391872_H
Name: SARS-CoV-2 antibody measurement, response to COVID-19 vaccine QTL GWAS1391872 (human)
RGD ID: 597295798
Trait: SARS-CoV-2 antibody measurement, response to COVID-19 vaccine
Measurement Type: blood anti-SARS-CoV-2 antibody level   (CMO:0003966)    
LOD Score: Not Available
P Value: 5.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382160,001,537 - 160,001,538RGD_MAPPER_PIPELINEGRCh38
GRCh372160,858,048 - 160,858,049RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1391872_HHumanblood anti-SARS-CoV-2 antibody level  IAGPrs79510369405850206 GWAS_CATALOGPMID:39384777

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1391872_HHumanresponse to COVID-19 vaccine  IAGPrs79510369405850206 GWAS_CATALOGPMID:39384777
GWAS1391872_HHumanSARS-CoV-2 antibody measurement  IAGPrs79510369405850206 GWAS_CATALOGPMID:39384777
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1350138PLA2R1phospholipase A2 receptor 12159923933160062615Human

Position Markers

Peak: (rs79510369)
Human AssemblyChrPosition (strand)Source
GRCh382160,001,537 - 160,001,538RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597295798GWAS1391872_HSARS-CoV-2 antibody measurement, response to COVID-19 vaccine QTL GWAS1391872 (human)5e-10SARS-CoV-2 antibody measurement, response to COVID-19 vaccineblood anti-SARS-CoV-2 antibody level (CMO:0003966)2160001537160001538Human
596959083GWAS1078602_HSARS-CoV-2 antibody measurement, response to COVID-19 vaccine QTL GWAS1078602 (human)5e-10SARS-CoV-2 antibody measurement, response to COVID-19 vaccine2160001537160001538Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1391872_H GCST90448693 Seroconversion induced by one dose of COVID-19 vaccine 15,046 European ancestry cases, 38,161 European ancestry controls T 0.01 5E-10 9.302 rs79510369 1.48 SARS-CoV-2 antibody measurement (EFO:0803360)
response to COVID-19 vaccine (EFO:0803362)
 PMID:39384777
Database Acc Id Source(s)
GWAS Catalog GCST90448693 GWAS Catalog

RGD Curation Notes
Note Type Note Reference