GWAS1347911_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1347911_H (Epstein-Barr virus seropositivity QTL GWAS1347911 (human)) Homo sapiens

Symbol: GWAS1347911_H
Name: Epstein-Barr virus seropositivity QTL GWAS1347911 (human)
RGD ID: 597251837
Trait: Epstein-Barr virus seropositivity
Measurement Type: serum anti-Epstein-Barr virus (EBV) antibody level   (CMO:0003143)    
LOD Score: Not Available
P Value: 4.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38632,707,332 - 32,707,333RGD_MAPPER_PIPELINEGRCh38
GRCh37632,675,109 - 32,675,110RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1347911_HHumanserum anti-Epstein-Barr virus (EBV) antibody level  IAGPrs9275524405850206 GWAS_CATALOGPMID:37164013

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1347911_HHumanEpstein-Barr virus seropositivity  IAGPrs9275524405850206 GWAS_CATALOGPMID:37164013
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs9275524)
Human AssemblyChrPosition (strand)Source
GRCh38632,707,332 - 32,707,333RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358839MULTSCL5_HMultiple sclerosis susceptibility QTL 5 (human)Multiple sclerosis susceptibility61958431145584311Human
597251837GWAS1347911_HEpstein-Barr virus seropositivity QTL GWAS1347911 (human)4e-12Epstein-Barr virus seropositivityserum anti-Epstein-Barr virus (EBV) antibody level (CMO:0003143)63270733232707333Human
597251836GWAS1347910_HEpstein-Barr virus seropositivity QTL GWAS1347910 (human)5e-09Epstein-Barr virus seropositivityserum anti-Epstein-Barr virus (EBV) antibody level (CMO:0003143)63270733232707333Human
597251839GWAS1347913_HEpstein-Barr virus seropositivity QTL GWAS1347913 (human)4e-13Epstein-Barr virus seropositivityserum anti-Epstein-Barr virus (EBV) antibody level (CMO:0003143)63270733232707333Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
1298431RA11_HRheumatoid arthritis QTL 11 (human)0.0000024Joint/bone inflammationrheumatoid arthritis61991188340191709Human
597064890GWAS1160964_Halopecia areata QTL GWAS1160964 (human)2e-60alopecia areata63270733232707333Human
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
596964110GWAS1083629_Hattention deficit hyperactivity disorder, bipolar disorder, autism spectrum disorder, schizophrenia, major depressive disorder QTL GWAS1083629 (human)0.0000002behavior trait (VT:0010442)63270733232707333Human
1358857MULTSCL19_HMultiple sclerosis susceptibility QTL 19 (human)Multiple sclerosis susceptibility61958431145584311Human
1643399BMD5_HBone mineral density QTL 5 (human)2.320.0005Bone mineral density6691196032911960Human
406897823GWAS546799_Hattention deficit hyperactivity disorder, unipolar depression, bipolar disorder, autism spectrum disorder, schizophrenia QTL GWAS546799 (human)0.0000002attention deficit hyperactivity disorder, unipolar depression, bipolar disorder, autism spectrum disorder, schizophrenia63270733232707333Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1160964_H GCST004866 Alopecia areata 2,332 European ancestry cases and 5,233 European ancestry controls C NR 2E-60 59.699 rs9275524 1.92 alopecia areata (EFO:0004192)
 PMID:25608926
GWAS1347910_H GCST90294373 Seropositivity for human gammaherpesvirus 4 (Epstein-Barr virus) peptide (agilent_4834) 1,745 individuals ? NR 5E-9 8.302 rs9275524 5.855 Epstein-Barr virus seropositivity (EFO:0010908)
 PMID:37164013
GWAS1347911_H GCST90294378 Seropositivity for human gammaherpesvirus 4 (Epstein-Barr virus) peptide (twist_52249) 1,745 individuals ? NR 4E-12 11.398 rs9275524 6.95 Epstein-Barr virus seropositivity (EFO:0010908)
 PMID:37164013
GWAS1347913_H GCST90294381 Seropositivity for human gammaherpesvirus 4 (Epstein-Barr virus) peptide (agilent_6000) 1,745 individuals ? NR 4E-13 12.398 rs9275524 7.259 Epstein-Barr virus seropositivity (EFO:0010908)
 PMID:37164013
GWAS1083629_H GCST001877 Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined) 6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls T NR 2E-7 6.699 rs9275524 1.07 attention deficit hyperactivity disorder (EFO:0003888)
autism spectrum disorder (EFO:0003756)
 PMID:23453885
Database Acc Id Source(s)
GWAS Catalog GCST90294378 GWAS Catalog

RGD Curation Notes
Note Type Note Reference