GWAS1347908_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS1347908_H (Epstein-Barr virus seropositivity QTL GWAS1347908 (human)) Homo sapiens

Symbol: GWAS1347908_H
Name: Epstein-Barr virus seropositivity QTL GWAS1347908 (human)
RGD ID: 597251834
Trait: Epstein-Barr virus seropositivity
Measurement Type: serum anti-Epstein-Barr virus (EBV) antibody level   (CMO:0003143)    
LOD Score: Not Available
P Value: 3.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38632,606,531 - 32,606,532RGD_MAPPER_PIPELINEGRCh38
GRCh37632,574,308 - 32,574,309RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1347908_HHumanserum anti-Epstein-Barr virus (EBV) antibody level  IAGPrs2760994405850206 GWAS_CATALOGPMID:37164013

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1347908_HHumanEpstein-Barr virus seropositivity  IAGPrs2760994405850206 GWAS_CATALOGPMID:37164013
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs2760994)
Human AssemblyChrPosition (strand)Source
GRCh38632,606,531 - 32,606,532RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358839MULTSCL5_HMultiple sclerosis susceptibility QTL 5 (human)Multiple sclerosis susceptibility61958431145584311Human
597251834GWAS1347908_HEpstein-Barr virus seropositivity QTL GWAS1347908 (human)3e-08Epstein-Barr virus seropositivityserum anti-Epstein-Barr virus (EBV) antibody level (CMO:0003143)63260653132606532Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
597289810GWAS1385884_Hesterified cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS1385884 (human)3e-11blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)63260653132606532Human
1298431RA11_HRheumatoid arthritis QTL 11 (human)0.0000024Joint/bone inflammationrheumatoid arthritis61991188340191709Human
597289751GWAS1385825_Htotal cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS1385825 (human)2e-10blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)63260653132606532Human
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
597296617GWAS1392691_Htriacylglycerol 50:1 measurement QTL GWAS1392691 (human)2e-08blood triglyceride amount (VT:0002644)63260653132606532Human
597296230GWAS1392304_Htriacylglycerol 50:2 measurement QTL GWAS1392304 (human)7e-10blood triglyceride amount (VT:0002644)63260653132606532Human
1358857MULTSCL19_HMultiple sclerosis susceptibility QTL 19 (human)Multiple sclerosis susceptibility61958431145584311Human
1643399BMD5_HBone mineral density QTL 5 (human)2.320.0005Bone mineral density6691196032911960Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1347908_H GCST90294372 Seropositivity for human gammaherpesvirus 4 (Epstein-Barr virus) peptide (agilent_6942) 1,745 individuals ? NR 3E-8 7.523 rs2760994 5.539 Epstein-Barr virus seropositivity (EFO:0010908)
 PMID:37164013
GWAS1385825_H GCST90302126 Total cholesterol levels in very large HDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.5998 2E-10 9.699 rs2760994 0.0272 total cholesterol measurement (EFO:0004574)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:38448586
GWAS1385884_H GCST90302128 Cholesterol esters in very large HDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.6006 3E-11 10.523 rs2760994 0.0286 esterified cholesterol measurement (EFO:0008589)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:38448586
GWAS1392304_H GCST90024545 Triacylglycerol (50:2) [NL-18:2] levels 4,492 European ancestry individuals T NR 7E-10 9.155 rs2760994 0.199 triacylglycerol 50:2 measurement (EFO:0010409)
 PMID:35668104
GWAS1392691_H GCST90024542 Triacylglycerol (50:1) [NL-18:1] levels 4,492 European ancestry individuals T NR 2E-8 7.699 rs2760994 0.181 triacylglycerol 50:1 measurement (EFO:0010408)
 PMID:35668104
Database Acc Id Source(s)
GWAS Catalog GCST90294372 GWAS Catalog

RGD Curation Notes
Note Type Note Reference