GWAS1347741_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1347741_H (Epstein-Barr virus seropositivity QTL GWAS1347741 (human)) Homo sapiens

Symbol: GWAS1347741_H
Name: Epstein-Barr virus seropositivity QTL GWAS1347741 (human)
RGD ID: 597251667
Trait: Epstein-Barr virus seropositivity
Measurement Type: serum anti-Epstein-Barr virus (EBV) antibody level   (CMO:0003143)    
LOD Score: Not Available
P Value: 8.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38632,608,987 - 32,608,988RGD_MAPPER_PIPELINEGRCh38
GRCh37632,576,764 - 32,576,765RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1347741_HHumanserum anti-Epstein-Barr virus (EBV) antibody level  IAGPrs9271116405850206 GWAS_CATALOGPMID:37164013

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1347741_HHumanEpstein-Barr virus seropositivity  IAGPrs9271116405850206 GWAS_CATALOGPMID:37164013
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs9271116)
Human AssemblyChrPosition (strand)Source
GRCh38632,608,987 - 32,608,988RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
1358839MULTSCL5_HMultiple sclerosis susceptibility QTL 5 (human)Multiple sclerosis susceptibility61958431145584311Human
597251450GWAS1347524_Hstreptococcus virus phage virus seropositivity QTL GWAS1347524 (human)8e-10streptococcus virus phage virus seropositivity63260898732608988Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
597251473GWAS1347547_Hseropositivity measurement QTL GWAS1347547 (human)4e-10response to infection trait (VT:0010434)63260898732608988Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
597251667GWAS1347741_HEpstein-Barr virus seropositivity QTL GWAS1347741 (human)8e-11Epstein-Barr virus seropositivityserum anti-Epstein-Barr virus (EBV) antibody level (CMO:0003143)63260898732608988Human
1298431RA11_HRheumatoid arthritis QTL 11 (human)0.0000024Joint/bone inflammationrheumatoid arthritis61991188340191709Human
1358857MULTSCL19_HMultiple sclerosis susceptibility QTL 19 (human)Multiple sclerosis susceptibility61958431145584311Human
1643399BMD5_HBone mineral density QTL 5 (human)2.320.0005Bone mineral density6691196032911960Human
597250022GWAS1346096_Hmycobacterium tuberculosis seropositivity QTL GWAS1346096 (human)3e-08mycobacterium tuberculosis seropositivity63260898732608988Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1346096_H GCST90294798 Seropositivity for mycobacterium tuberculosis peptide (agilent_10341) 1,745 individuals ? NR 3E-8 7.523 rs9271116 5.539 mycobacterium tuberculosis seropositivity (EFO:0803635)
 PMID:37164013
GWAS1347524_H GCST90293102 Seropositivity for streptococcus phage peptide (twist_76831) 1,745 individuals ? NR 8E-10 9.097 rs9271116 6.149 streptococcus virus phage virus seropositivity (EFO:0803672)
 PMID:37164013
GWAS1347547_H GCST90295935 Seropositivity (peptide co-occurrence module 13: ABC transporters , ATP-binding proteins) 1,745 individuals ? NR 4E-10 9.398 rs9271116 6.271 seropositivity measurement (EFO:0007034)
 PMID:37164013
GWAS1347741_H GCST90294361 Seropositivity for human gammaherpesvirus 4 (Epstein-Barr virus) peptide (twist_46937) 1,745 individuals ? NR 8E-11 10.097 rs9271116 6.506 Epstein-Barr virus seropositivity (EFO:0010908)
 PMID:37164013
Database Acc Id Source(s)
GWAS Catalog GCST90294361 GWAS Catalog

RGD Curation Notes
Note Type Note Reference