GWAS1347740_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1347740_H (Epstein-Barr virus seropositivity QTL GWAS1347740 (human)) Homo sapiens

Symbol: GWAS1347740_H
Name: Epstein-Barr virus seropositivity QTL GWAS1347740 (human)
RGD ID: 597251666
Trait: Epstein-Barr virus seropositivity
Measurement Type: serum anti-Epstein-Barr virus (EBV) antibody level   (CMO:0003143)    
LOD Score: Not Available
P Value: 3.0E-15
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38632,710,069 - 32,710,070RGD_MAPPER_PIPELINEGRCh38
GRCh37632,677,846 - 32,677,847RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1347740_HHumanserum anti-Epstein-Barr virus (EBV) antibody level  IAGPrs4947344405850206 GWAS_CATALOGPMID:37164013

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1347740_HHumanEpstein-Barr virus seropositivity  IAGPrs4947344405850206 GWAS_CATALOGPMID:37164013
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs4947344)
Human AssemblyChrPosition (strand)Source
GRCh38632,710,069 - 32,710,070RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597251448GWAS1347522_Hklebsiella phage virus seropositivity QTL GWAS1347522 (human)3e-09klebsiella phage virus seropositivity63271006932710070Human
597251480GWAS1347554_Hseropositivity measurement QTL GWAS1347554 (human)9e-11response to infection trait (VT:0010434)63271006932710070Human
1358839MULTSCL5_HMultiple sclerosis susceptibility QTL 5 (human)Multiple sclerosis susceptibility61958431145584311Human
597066994GWAS1163068_Hsusceptibility to Mycobacterium tuberculosis infection measurement QTL GWAS1163068 (human)1e-24response to bacterial infection trait (VT:0010435)63271006932710070Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
597251666GWAS1347740_HEpstein-Barr virus seropositivity QTL GWAS1347740 (human)3e-15Epstein-Barr virus seropositivityserum anti-Epstein-Barr virus (EBV) antibody level (CMO:0003143)63271006932710070Human
1298431RA11_HRheumatoid arthritis QTL 11 (human)0.0000024Joint/bone inflammationrheumatoid arthritis61991188340191709Human
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
597153506GWAS1249580_HBMI-adjusted waist-hip ratio QTL GWAS1249580 (human)6e-09body size trait (VT:0100005)63271006932710070Human
597251520GWAS1347594_Henterobacter phage virus seropositivity QTL GWAS1347594 (human)5e-10enterobacter phage virus seropositivity63271006932710070Human
597251840GWAS1347914_HEpstein-Barr virus seropositivity QTL GWAS1347914 (human)8e-13Epstein-Barr virus seropositivityserum anti-Epstein-Barr virus (EBV) antibody level (CMO:0003143)63271006932710070Human
597251522GWAS1347596_Henterobacter phage virus seropositivity QTL GWAS1347596 (human)2e-08enterobacter phage virus seropositivity63271006932710070Human
1358857MULTSCL19_HMultiple sclerosis susceptibility QTL 19 (human)Multiple sclerosis susceptibility61958431145584311Human
1643399BMD5_HBone mineral density QTL 5 (human)2.320.0005Bone mineral density6691196032911960Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1813521_H GCST009154 Anti-anoctamin 2 antibody levels 11,936 European ancestry individuals A NR 1E-9 9 rs4947344 0.056 blood immunoglobulin amount (OBA:VT0002460)
 PMID:31375628
GWAS1163068_H GCST005006 Tuberculosis 4,426 European ancestry cases, 84,290 European ancestry controls ? NR 1E-24 24 rs4947344 0.2606 susceptibility to Mycobacterium tuberculosis infection measurement (EFO:0008407)
 PMID:28928442
GWAS1249580_H GCST90020027 Waist-hip index 219,872 British ancestry women T NR 6E-9 8.222 rs4947344 0.0183059 BMI-adjusted waist-hip ratio (EFO:0007788)
 PMID:34021172
GWAS1347522_H GCST90293101 Seropositivity for klebsiella phage peptide (twist_73875) 1,745 individuals ? NR 3E-9 8.523 rs4947344 5.937 klebsiella phage virus seropositivity (EFO:0803662)
 PMID:37164013
GWAS1347554_H GCST90295941 Seropositivity (peptide co-occurrence module 19: pathobion, phages) 1,745 individuals ? NR 9E-11 10.046 rs4947344 6.49 seropositivity measurement (EFO:0007034)
 PMID:37164013
GWAS1347594_H GCST90293738 Seropositivity for enterobacteria phage peptide (twist_65044) 1,745 individuals ? NR 5E-10 9.302 rs4947344 6.222 enterobacter phage virus seropositivity (EFO:0803658)
 PMID:37164013
GWAS1347596_H GCST90293746 Seropositivity for enterobacteria phage phi1 peptide (twist_60834) 1,745 individuals ? NR 2E-8 7.699 rs4947344 5.629 enterobacter phage virus seropositivity (EFO:0803658)
 PMID:37164013
GWAS1347740_H GCST90294361 Seropositivity for human gammaherpesvirus 4 (Epstein-Barr virus) peptide (twist_46937) 1,745 individuals ? NR 3E-15 14.523 rs4947344 7.912 Epstein-Barr virus seropositivity (EFO:0010908)
 PMID:37164013
GWAS1347914_H GCST90294384 Seropositivity for human gammaherpesvirus 4 (Epstein-Barr virus) peptide (twist_35320) 1,745 individuals ? NR 8E-13 12.097 rs4947344 7.164 Epstein-Barr virus seropositivity (EFO:0010908)
 PMID:37164013
Database Acc Id Source(s)
GWAS Catalog GCST90294361 GWAS Catalog

RGD Curation Notes
Note Type Note Reference