GWAS1346404_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1346404_H (Epstein-Barr virus seropositivity QTL GWAS1346404 (human)) Homo sapiens

Symbol: GWAS1346404_H
Name: Epstein-Barr virus seropositivity QTL GWAS1346404 (human)
RGD ID: 597250330
Trait: Epstein-Barr virus seropositivity
Measurement Type: serum anti-Epstein-Barr virus (EBV) antibody level   (CMO:0003143)    
LOD Score: Not Available
P Value: 3.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38632,179,984 - 32,179,985RGD_MAPPER_PIPELINEGRCh38
GRCh37632,147,761 - 32,147,762RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1346404_HHumanserum anti-Epstein-Barr virus (EBV) antibody level  IAGPrs3134943405850206 GWAS_CATALOGPMID:37164013

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1346404_HHumanEpstein-Barr virus seropositivity  IAGPrs3134943405850206 GWAS_CATALOGPMID:37164013
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1352556RNF5ring finger protein 563217840532180793Human

Position Markers

Peak: (rs3134943)
Human AssemblyChrPosition (strand)Source
GRCh38632,179,984 - 32,179,985RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597063670GWAS1159744_Hmosquito bite reaction itch intensity measurement, mosquito bite reaction size measurement QTL GWAS1159744 (human)0.0000002mosquito bite reaction itch intensity measurement, mosquito bite reaction size measurement63217998432179985Human
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
1358839MULTSCL5_HMultiple sclerosis susceptibility QTL 5 (human)Multiple sclerosis susceptibility61958431145584311Human
597250330GWAS1346404_HEpstein-Barr virus seropositivity QTL GWAS1346404 (human)3e-08Epstein-Barr virus seropositivityserum anti-Epstein-Barr virus (EBV) antibody level (CMO:0003143)63217998432179985Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
1298431RA11_HRheumatoid arthritis QTL 11 (human)0.0000024Joint/bone inflammationrheumatoid arthritis61991188340191709Human
1358857MULTSCL19_HMultiple sclerosis susceptibility QTL 19 (human)Multiple sclerosis susceptibility61958431145584311Human
1643399BMD5_HBone mineral density QTL 5 (human)2.320.0005Bone mineral density6691196032911960Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1159744_H GCST004862 Itch intensity from mosquito bite adjusted by bite size 41,355 European ancestry men and 43,369 European ancestry women T NR 2E-7 6.699 rs3134943 0.0338184 mosquito bite reaction itch intensity measurement (EFO:0008377)
mosquito bite reaction size measurement (EFO:0008378)
 PMID:28199695
GWAS1346404_H GCST90294432 Seropositivity for human gammaherpesvirus 4 (Epstein-Barr virus) peptide (twist_31240) 1,745 individuals ? NR 3E-8 7.523 rs3134943 5.549 Epstein-Barr virus seropositivity (EFO:0010908)
 PMID:37164013
Database Acc Id Source(s)
GWAS Catalog GCST90294432 GWAS Catalog

RGD Curation Notes
Note Type Note Reference