GWAS1346403_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1346403_H (Epstein-Barr virus seropositivity QTL GWAS1346403 (human)) Homo sapiens

Symbol: GWAS1346403_H
Name: Epstein-Barr virus seropositivity QTL GWAS1346403 (human)
RGD ID: 597250329
Trait: Epstein-Barr virus seropositivity
Measurement Type: serum anti-Epstein-Barr virus (EBV) antibody level   (CMO:0003143)    
LOD Score: Not Available
P Value: 3.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38631,644,000 - 31,644,001RGD_MAPPER_PIPELINEGRCh38
GRCh37631,611,777 - 31,611,778RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1346403_HHumanserum anti-Epstein-Barr virus (EBV) antibody level  IAGPrs760293405850206 GWAS_CATALOGPMID:37164013

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1346403_HHumanEpstein-Barr virus seropositivity  IAGPrs760293405850206 GWAS_CATALOGPMID:37164013
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
733092BAG6BAG cochaperone 663163902831652661Human

Position Markers

Peak: (rs760293)
Human AssemblyChrPosition (strand)Source
GRCh38631,644,000 - 31,644,001RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597250329GWAS1346403_HEpstein-Barr virus seropositivity QTL GWAS1346403 (human)3e-09Epstein-Barr virus seropositivityserum anti-Epstein-Barr virus (EBV) antibody level (CMO:0003143)63164400031644001Human
597251256GWAS1347330_Hstaphylococcus seropositivity QTL GWAS1347330 (human)5e-10staphylococcus seropositivity63164400031644001Human
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
1358839MULTSCL5_HMultiple sclerosis susceptibility QTL 5 (human)Multiple sclerosis susceptibility61958431145584311Human
597249678GWAS1345752_Hseropositivity measurement QTL GWAS1345752 (human)4e-09response to infection trait (VT:0010434)63164400031644001Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
597251251GWAS1347325_Hstaphylococcus seropositivity QTL GWAS1347325 (human)5e-09staphylococcus seropositivity63164400031644001Human
1298431RA11_HRheumatoid arthritis QTL 11 (human)0.0000024Joint/bone inflammationrheumatoid arthritis61991188340191709Human
1358857MULTSCL19_HMultiple sclerosis susceptibility QTL 19 (human)Multiple sclerosis susceptibility61958431145584311Human
1643399BMD5_HBone mineral density QTL 5 (human)2.320.0005Bone mineral density6691196032911960Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1345752_H GCST90295943 Seropositivity (peptide co-occurrence module 21: plant thionins) 1,745 individuals ? NR 4E-9 8.398 rs760293 5.882 seropositivity measurement (EFO:0007034)
 PMID:37164013
GWAS1346403_H GCST90294432 Seropositivity for human gammaherpesvirus 4 (Epstein-Barr virus) peptide (twist_31240) 1,745 individuals ? NR 3E-9 8.523 rs760293 5.917 Epstein-Barr virus seropositivity (EFO:0010908)
 PMID:37164013
GWAS1347325_H GCST90295484 Seropositivity for staphylococcus aureus peptide (twist_34337) 1,745 individuals ? NR 5E-9 8.302 rs760293 5.832 staphylococcus seropositivity (EFO:0803650)
 PMID:37164013
GWAS1347330_H GCST90295485 Seropositivity for staphylococcus aureus peptide (twist_39975) 1,745 individuals ? NR 5E-10 9.302 rs760293 6.221 staphylococcus seropositivity (EFO:0803650)
 PMID:37164013
GWAS1868395_H GCST90551872 Substantia nigra iron levels (R2* MRI) 39,533 European ancestry individuals T NR 6E-10 9.222 rs760293 0.054103 PMID:38789058
Database Acc Id Source(s)
GWAS Catalog GCST90294432 GWAS Catalog

RGD Curation Notes
Note Type Note Reference