GWAS1346402_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1346402_H (Epstein-Barr virus seropositivity QTL GWAS1346402 (human)) Homo sapiens

Symbol: GWAS1346402_H
Name: Epstein-Barr virus seropositivity QTL GWAS1346402 (human)
RGD ID: 597250328
Trait: Epstein-Barr virus seropositivity
Measurement Type: serum anti-Epstein-Barr virus (EBV) antibody level   (CMO:0003143)    
LOD Score: Not Available
P Value: 4.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38632,251,543 - 32,251,544RGD_MAPPER_PIPELINEGRCh38
GRCh37632,219,320 - 32,219,321RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1346402_HHumanserum anti-Epstein-Barr virus (EBV) antibody level  IAGPrs9267989405850206 GWAS_CATALOGPMID:37164013

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1346402_HHumanEpstein-Barr virus seropositivity  IAGPrs9267989405850206 GWAS_CATALOGPMID:37164013
GWAS1346402_HHumansmall intestine carcinoma  IAGPrs9267989405850206 GWAS_CATALOGPMID:37965154
Disease Annotations     Click to see Annotation Detail View

Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs9267989)
Human AssemblyChrPosition (strand)Source
GRCh38632,251,543 - 32,251,544RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597250328GWAS1346402_HEpstein-Barr virus seropositivity QTL GWAS1346402 (human)4e-08small intestine carcinomaserum anti-Epstein-Barr virus (EBV) antibody level (CMO:0003143)63225154332251544Human
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
1358839MULTSCL5_HMultiple sclerosis susceptibility QTL 5 (human)Multiple sclerosis susceptibility61958431145584311Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
1298431RA11_HRheumatoid arthritis QTL 11 (human)0.0000024Joint/bone inflammationrheumatoid arthritis61991188340191709Human
1358857MULTSCL19_HMultiple sclerosis susceptibility QTL 19 (human)Multiple sclerosis susceptibility61958431145584311Human
597251876GWAS1347950_Hadenoviridae virus seropositivity QTL GWAS1347950 (human)1e-10adenoviridae virus seropositivity63225154332251544Human
1643399BMD5_HBone mineral density QTL 5 (human)2.320.0005Bone mineral density6691196032911960Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1346402_H GCST90294420 Seropositivity for human gammaherpesvirus 4 (Epstein-Barr virus) peptide (agilent_6936) 1,745 individuals ? NR 4E-8 7.398 rs9267989 5.476 Epstein-Barr virus seropositivity (EFO:0010908)
 PMID:37164013
GWAS1347950_H GCST90293109 Seropositivity for human adenovirus 12 peptide (twist_55551) 1,745 individuals ? NR 1E-10 10 rs9267989 6.44 adenoviridae virus seropositivity (EFO:0803674)
 PMID:37164013
None Available GCST90432150 Cancer code, self-reported: small intestinal cancer (UKB data field 20001_1019) 116,382 European ancestry cases, 213,325 European ancestry controls ? NR 4E-8 7.398 rs9267989 1.52 small intestine carcinoma (EFO:0005588)
 PMID:37965154
GWAS1930704_H GCST90468093 Neutrophill percentage (UKB data field 30200) 394,642 European ancestry individuals T 0.21373606 9E-35 34.046 rs9267989 0.029281614 neutrophil percentage of leukocytes (EFO:0007990)
 PMID:39789286
Database Acc Id Source(s)
GWAS Catalog GCST90294420 GWAS Catalog
  GCST90432150 GWAS Catalog

RGD Curation Notes
Note Type Note Reference