GWAS1346399_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1346399_H (Epstein-Barr virus seropositivity QTL GWAS1346399 (human)) Homo sapiens

Symbol: GWAS1346399_H
Name: Epstein-Barr virus seropositivity QTL GWAS1346399 (human)
RGD ID: 597250325
Trait: Epstein-Barr virus seropositivity
Measurement Type: serum anti-Epstein-Barr virus (EBV) antibody level   (CMO:0003143)    
LOD Score: Not Available
P Value: 3.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38632,710,135 - 32,710,136RGD_MAPPER_PIPELINEGRCh38
GRCh37632,677,912 - 32,677,913RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1346399_HHumanserum anti-Epstein-Barr virus (EBV) antibody level  IAGPrs9275563405850206 GWAS_CATALOGPMID:37164013

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1346399_HHumanEpstein-Barr virus seropositivity  IAGPrs9275563405850206 GWAS_CATALOGPMID:37164013
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs9275563)
Human AssemblyChrPosition (strand)Source
GRCh38632,710,135 - 32,710,136RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407145925GWAS794901_Holigoclonal band measurement, multiple sclerosis QTL GWAS794901 (human)6e-11oligoclonal band measurement, multiple sclerosis63271013532710136Human
1358839MULTSCL5_HMultiple sclerosis susceptibility QTL 5 (human)Multiple sclerosis susceptibility61958431145584311Human
597250170GWAS1346244_HEpstein-Barr virus seropositivity QTL GWAS1346244 (human)1e-09Epstein-Barr virus seropositivityserum anti-Epstein-Barr virus (EBV) antibody level (CMO:0003143)63271013532710136Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
597348563GWAS1444637_Hurate measurement QTL GWAS1444637 (human)1e-13urate measurementblood uric acid level (CMO:0000501)63271013532710136Human
597269202GWAS1365276_HBMI-adjusted hip circumference QTL GWAS1365276 (human)4e-11BMI-adjusted hip circumferencehip circumference (CMO:0000014)63271013532710136Human
1298431RA11_HRheumatoid arthritis QTL 11 (human)0.0000024Joint/bone inflammationrheumatoid arthritis61991188340191709Human
597250325GWAS1346399_HEpstein-Barr virus seropositivity QTL GWAS1346399 (human)3e-10Epstein-Barr virus seropositivityserum anti-Epstein-Barr virus (EBV) antibody level (CMO:0003143)63271013532710136Human
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
1358857MULTSCL19_HMultiple sclerosis susceptibility QTL 19 (human)Multiple sclerosis susceptibility61958431145584311Human
1643399BMD5_HBone mineral density QTL 5 (human)2.320.0005Bone mineral density6691196032911960Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS794901_H GCST001892 Multiple sclerosis (OCB status) 1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls ? NR 6E-11 10.222 rs9275563 1.75 oligoclonal band measurement (EFO:0005206)
 PMID:23472185
GWAS1346244_H GCST90294416 Seropositivity for human gammaherpesvirus 4 (Epstein-Barr virus) peptide (agilent_212) 1,745 individuals ? NR 1E-9 9 rs9275563 6.074 Epstein-Barr virus seropositivity (EFO:0010908)
 PMID:37164013
GWAS1346399_H GCST90294417 Seropositivity for human gammaherpesvirus 4 (Epstein-Barr virus) peptide (twist_46426) 1,745 individuals ? NR 3E-10 9.523 rs9275563 6.322 Epstein-Barr virus seropositivity (EFO:0010908)
 PMID:37164013
GWAS1365276_H GCST012227 Hip circumference adjusted for BMI 186,825 British ancestry men T NR 4E-11 10.398 rs9275563 0.0202974 BMI-adjusted hip circumference (EFO:0008039)
 PMID:34021172
GWAS1444637_H GCST90319904 Serum urate levels 219,768 East Asian ancestry individuals, 677,373 European ancestry individuals, 132,182 individuals T NR 1E-13 13 rs9275563 0.0171 urate measurement (EFO:0004531)
 PMID:38658550
Database Acc Id Source(s)
GWAS Catalog GCST90294417 GWAS Catalog

RGD Curation Notes
Note Type Note Reference