GWAS1346266_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1346266_H (Epstein-Barr virus seropositivity QTL GWAS1346266 (human)) Homo sapiens

Symbol: GWAS1346266_H
Name: Epstein-Barr virus seropositivity QTL GWAS1346266 (human)
RGD ID: 597250192
Trait: Epstein-Barr virus seropositivity
Measurement Type: serum anti-Epstein-Barr virus (EBV) antibody level   (CMO:0003143)    
LOD Score: Not Available
P Value: 5.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38632,310,858 - 32,310,859RGD_MAPPER_PIPELINEGRCh38
GRCh37632,278,635 - 32,278,636RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1346266_HHumanserum anti-Epstein-Barr virus (EBV) antibody level  IAGPrs9268199405850206 GWAS_CATALOGPMID:37164013

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1346266_HHumanEpstein-Barr virus seropositivity  IAGPrs9268199405850206 GWAS_CATALOGPMID:37164013
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
13782242TSBP1-AS1TSBP1 and BTNL2 antisense RNA 163225517332407730Human
1346663TSBP1testis expressed basic protein 163229269832371903Human

Position Markers

Peak: (rs9268199)
Human AssemblyChrPosition (strand)Source
GRCh38632,310,858 - 32,310,859RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597063671GWAS1159745_Hmosquito bite reaction itch intensity measurement, mosquito bite reaction size measurement QTL GWAS1159745 (human)2e-08body size trait (VT:0100005)63231085832310859Human
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
1358839MULTSCL5_HMultiple sclerosis susceptibility QTL 5 (human)Multiple sclerosis susceptibility61958431145584311Human
597304430GWAS1400504_HBMI-adjusted waist-hip ratio QTL GWAS1400504 (human)3e-08body size trait (VT:0100005)63231085832310859Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
597250192GWAS1346266_HEpstein-Barr virus seropositivity QTL GWAS1346266 (human)5e-13Epstein-Barr virus seropositivityserum anti-Epstein-Barr virus (EBV) antibody level (CMO:0003143)63231085832310859Human
1298431RA11_HRheumatoid arthritis QTL 11 (human)0.0000024Joint/bone inflammationrheumatoid arthritis61991188340191709Human
1358857MULTSCL19_HMultiple sclerosis susceptibility QTL 19 (human)Multiple sclerosis susceptibility61958431145584311Human
597251668GWAS1347742_HEpstein-Barr virus seropositivity QTL GWAS1347742 (human)9e-11Epstein-Barr virus seropositivityserum anti-Epstein-Barr virus (EBV) antibody level (CMO:0003143)63231085832310859Human
1643399BMD5_HBone mineral density QTL 5 (human)2.320.0005Bone mineral density6691196032911960Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1159745_H GCST004862 Itch intensity from mosquito bite adjusted by bite size 41,355 European ancestry men and 43,369 European ancestry women G NR 2E-8 7.699 rs9268199 0.0327867 mosquito bite reaction itch intensity measurement (EFO:0008377)
mosquito bite reaction size measurement (EFO:0008378)
 PMID:28199695
None Available GCST90020024 A body shape index 219,872 British ancestry women G NR 2E-8 7.699 rs9268199 0.0207992 BMI-adjusted waist circumference (EFO:0007789)
 PMID:34021172
None Available GCST90020025 Waist-to-hip ratio adjusted for BMI 219,872 British ancestry women G NR 2E-8 7.699 rs9268199 0.0203912 BMI-adjusted waist-hip ratio (EFO:0007788)
 PMID:34021172
GWAS1346266_H GCST90294323 Seropositivity for human gammaherpesvirus 4 (Epstein-Barr virus) peptide (twist_36361) 1,745 individuals ? NR 5E-13 12.302 rs9268199 7.225 Epstein-Barr virus seropositivity (EFO:0010908)
 PMID:37164013
GWAS1347742_H GCST90294361 Seropositivity for human gammaherpesvirus 4 (Epstein-Barr virus) peptide (twist_46937) 1,745 individuals ? NR 9E-11 10.046 rs9268199 6.49 Epstein-Barr virus seropositivity (EFO:0010908)
 PMID:37164013
GWAS1400504_H GCST90020027 Waist-hip index 219,872 British ancestry women G NR 3E-8 7.523 rs9268199 0.0201935 BMI-adjusted waist-hip ratio (EFO:0007788)
 PMID:34021172
Database Acc Id Source(s)
GWAS Catalog GCST90294323 GWAS Catalog

RGD Curation Notes
Note Type Note Reference