GWAS1311000_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL: GWAS1311000_H (renin measurement QTL GWAS1311000 (human)) Homo sapiens

Symbol: GWAS1311000_H
Name: renin measurement QTL GWAS1311000 (human)
RGD ID: 597214926
Trait: adrenal gland renin amount   (VT:0010952)    
blood renin amount   (VT:0003349)    
kidney renin amount   (VT:0010559)    
renin activity   (VT:0005581)    
LOD Score: Not Available
P Value: 2.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38111,926,345 - 1,926,346RGD_MAPPER_PIPELINEGRCh38
GRCh37111,947,575 - 1,947,576RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Vertebrate Trait

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1311000_HHumanrenin measurement  IAGPrs540710405850206 GWAS_CATALOGPMID:33067605
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
737137TNNT3troponin T3, fast skeletal type1119195521938702Human

Position Markers

Peak: (rs540710)
Human AssemblyChrPosition (strand)Source
GRCh38111,926,345 - 1,926,346RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558691SCL8_HSerum cholesterol level QTL 8 (human)1.2Lipid levelHDL cholesterol1115227071Human
597214926GWAS1311000_Hrenin measurement QTL GWAS1311000 (human)0.0000002renin activity (VT:0005581)1119263451926346Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1311000_H GCST90012038 Renin levels 21,758 European ancestry individuals A 0.38 2E-7 6.699 rs540710 0.0461 renin measurement (EFO:0010616)
PMID:33067605
Database Acc Id Source(s)
GWAS Catalog GCST90012038 GWAS Catalog

RGD Curation Notes
Note Type Note Reference