GWAS1310999_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL: GWAS1310999_H (renin measurement QTL GWAS1310999 (human)) Homo sapiens

Symbol: GWAS1310999_H
Name: renin measurement QTL GWAS1310999 (human)
RGD ID: 597214925
Trait: adrenal gland renin amount   (VT:0010952)    
blood renin amount   (VT:0003349)    
kidney renin amount   (VT:0010559)    
renin activity   (VT:0005581)    
LOD Score: Not Available
P Value: 3.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382203,171,634 - 203,171,635RGD_MAPPER_PIPELINEGRCh38
GRCh372204,036,357 - 204,036,358RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Vertebrate Trait

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1310999_HHumanrenin measurement  IAGPrs72936304405850206 GWAS_CATALOGPMID:33067605
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1349211NBEAL1neurobeachin like 12203014608203225194Human

Position Markers

Peak: (rs72936304)
Human AssemblyChrPosition (strand)Source
GRCh382203,171,634 - 203,171,635RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293458PRSTS291_HProstate tumor susceptibility QTL 291 (human)0.012Prostate tumor susceptibility2200715236226715236Human
1643053BW117_HBody Weight QTL 117 (human)2.40.00044Body weight2200715236226715236Human
597214925GWAS1310999_Hrenin measurement QTL GWAS1310999 (human)3e-10renin activity (VT:0005581)2203171634203171635Human
1643254BW125_HBody Weight QTL 125 (human)1.450.005Body weightbody mass index2200715236226715236Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1310999_H GCST90012038 Renin levels 21,758 European ancestry individuals T 0.87 3E-10 9.523 rs72936304 0.0821 renin measurement (EFO:0010616)
PMID:33067605
Database Acc Id Source(s)
GWAS Catalog GCST90012038 GWAS Catalog

RGD Curation Notes
Note Type Note Reference