GWAS1278341_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1278341_H (Epstein-Barr virus seropositivity QTL GWAS1278341 (human)) Homo sapiens

Symbol: GWAS1278341_H
Name: Epstein-Barr virus seropositivity QTL GWAS1278341 (human)
RGD ID: 597182267
Trait: Epstein-Barr virus seropositivity
Measurement Type: serum anti-Epstein-Barr virus (EBV) antibody level   (CMO:0003143)    
LOD Score: Not Available
P Value: 2.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3813114,072,886 - 114,072,887RGD_MAPPER_PIPELINEGRCh38
GRCh3713114,838,361 - 114,838,362RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1278341_HHumanserum anti-Epstein-Barr virus (EBV) antibody level  IAGPrs71449058405850206 GWAS_CATALOGPMID:36737699

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1278341_HHumanEpstein-Barr virus seropositivity  IAGPrs71449058405850206 GWAS_CATALOGPMID:36737699
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1343935RASA3RAS p21 protein activator 313113977783114132623Human

Position Markers

Peak: (rs71449058)
Human AssemblyChrPosition (strand)Source
GRCh3813114,072,886 - 114,072,887RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597182267GWAS1278341_HEpstein-Barr virus seropositivity QTL GWAS1278341 (human)2e-10Epstein-Barr virus seropositivityserum anti-Epstein-Barr virus (EBV) antibody level (CMO:0003143)13114072886114072887Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1278341_H GCST90270367 Epstein-Barr virus seropositivity 7,795 European ancestry cases, 449 European ancestry controls ? NR 2E-10 9.699 rs71449058 0.1 Epstein-Barr virus seropositivity (EFO:0010908)
 PMID:36737699
Database Acc Id Source(s)
GWAS Catalog GCST90270367 GWAS Catalog

RGD Curation Notes
Note Type Note Reference