GWAS1275399_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1275399_H (SARS-CoV-2 antibody measurement, response to COVID-19 vaccine QTL GWAS1275399 (human)) Homo sapiens

Symbol: GWAS1275399_H
Name: SARS-CoV-2 antibody measurement, response to COVID-19 vaccine QTL GWAS1275399 (human)
RGD ID: 597179325
Trait: SARS-CoV-2 antibody measurement, response to COVID-19 vaccine
Measurement Type: blood anti-SARS-CoV-2 antibody level   (CMO:0003966)    
LOD Score: Not Available
P Value: 6.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38464,448,035 - 64,448,036RGD_MAPPER_PIPELINEGRCh38
GRCh37465,313,753 - 65,313,754RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1275399_HHumanblood anti-SARS-CoV-2 antibody level  IAGPrs13434443405850206 GWAS_CATALOGPMID:37469131

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1275399_HHumanresponse to COVID-19 vaccine  IAGPrs13434443405850206 GWAS_CATALOGPMID:37469131
GWAS1275399_HHumanSARS-CoV-2 antibody measurement  IAGPrs13434443405850206 GWAS_CATALOGPMID:37469131
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs13434443)
Human AssemblyChrPosition (strand)Source
GRCh38464,448,035 - 64,448,036RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597179325GWAS1275399_HSARS-CoV-2 antibody measurement, response to COVID-19 vaccine QTL GWAS1275399 (human)0.000006SARS-CoV-2 antibody measurement, response to COVID-19 vaccineblood anti-SARS-CoV-2 antibody level (CMO:0003966)46444803564448036Human
597179549GWAS1275623_HSARS-CoV-2 antibody measurement, response to COVID-19 vaccine QTL GWAS1275623 (human)0.000002SARS-CoV-2 antibody measurement, response to COVID-19 vaccineblood anti-SARS-CoV-2 antibody level (CMO:0003966)46444803564448036Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1275399_H GCST90256681 Response to BNT162b2 vaccine (anti-SARS-CoV-2 Spike antibody levels at two months after first dose) 873 Italian ancestry individuals ? NR 0.000006 5.222 rs13434443 N/A SARS-CoV-2 antibody measurement (EFO:0803360)
response to COVID-19 vaccine (EFO:0803362)
 PMID:37469131
GWAS1275623_H GCST90256682 Response to BNT162b2 vaccine (anti-SARS-CoV-2 Spike antibody levels at four months after first dose) 868 Italian ancestry individuals ? NR 0.000002 5.699 rs13434443 N/A SARS-CoV-2 antibody measurement (EFO:0803360)
response to COVID-19 vaccine (EFO:0803362)
 PMID:37469131
Database Acc Id Source(s)
GWAS Catalog GCST90256681 GWAS Catalog

RGD Curation Notes
Note Type Note Reference