GWAS1137861_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL: GWAS1137861_H (renin measurement QTL GWAS1137861 (human)) Homo sapiens

Symbol: GWAS1137861_H
Name: renin measurement QTL GWAS1137861 (human)
RGD ID: 597041787
Trait: adrenal gland renin amount   (VT:0010952)    
blood renin amount   (VT:0003349)    
kidney renin amount   (VT:0010559)    
renin activity   (VT:0005581)    
LOD Score: Not Available
P Value: 4.0E-17
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381204,641,544 - 204,641,545RGD_MAPPER_PIPELINEGRCh38
GRCh371204,610,672 - 204,610,673RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Vertebrate Trait

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1137861_HHumanrenin measurement  IAGPrs116661163405850206 GWAS_CATALOGPMID:28369058
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1313534LRRN2leucine rich repeat neuronal 21204617170204685738Human

Position Markers

Peak: (rs116661163)
Human AssemblyChrPosition (strand)Source
GRCh381204,641,544 - 204,641,545RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597041787GWAS1137861_Hrenin measurement QTL GWAS1137861 (human)4e-17renin activity (VT:0005581)1204641544204641545Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1137861_H GCST009731 Blood protein levels in cardiovascular risk 3,394 European ancestry individuals C 0.98 4E-17 16.398 rs116661163 0.72 renin measurement (EFO:0010616)
PMID:28369058
Database Acc Id Source(s)
GWAS Catalog GCST009731 GWAS Catalog

RGD Curation Notes
Note Type Note Reference