Tcpm1_m QTL Report (Mus musculus) - Rat Genome Database

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QTL: Tcpm1_m (T-cell phenotype modifier 1 (mouse)) Mus musculus

Symbol: Tcpm1_m
Name: T-cell phenotype modifier 1 (mouse)
RGD ID: 4141770
Trait: Not determined
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm391151,452,479 - 53,615,930MOUSEQTLGRCm39
GRCm381151,561,652 - 53,725,103MOUSEQTLGRCm38
cM Map11syntenicMOUSEQTL
Cross Type: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Mouse Genome Database (MGD) Mouse Genome Database (MGD)
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
Additional References at PubMed
PMID:8901605  


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2311270D930048N14RikRIKEN cDNA D930048N14 gene115154178151548508Mouse
735586Ppp2caprotein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform115198965152013576Mouse
732558Vdac1voltage-dependent anion channel 1115225190552280224Mouse
730897Hnrnpabheterogeneous nuclear ribonucleoprotein A/B115149092751497708Mouse
1319778Nhp2NHP2 ribonucleoprotein115151060051514545Mouse
1318223Septin8septin 8115341022453440432Mouse
1313711Sar1bsecretion associated Ras related GTPase 1B115165449051682780Mouse
733191Hspa4heat shock protein 4115315064153191306Mouse
731373Cdkl3cyclin dependent kinase like 3115189169451980605Mouse
401850776Gm9945predicted gene 9945115336999753374249Mouse
1319334Jade2jade family PHD finger 2115170427851749835Mouse
13212079530068E07RikRIKEN cDNA 9530068E07 gene115228725552299550Mouse
1317661Phykpl5-phosphohydroxy-L-lysine phospholyase115147475151494091Mouse
10796Il4interleukin 4115350328753509492Mouse
10799Il5interleukin 5115361162153615930Mouse
1553169Col23a1collagen, type XXIII, alpha 1115118050851474752Mouse
1550909Zcchc10zinc finger, CCHC domain containing 10115321551653224128Mouse
1553334Skp1S-phase kinase-associated protein 1115212134952137685Mouse
1558050Uqcrqubiquinol-cytochrome c reductase, complex III subunit VII115331874953321658Mouse
1552608Kif3akinesin family member 3A115345653153495075Mouse
1607755A430108G06RikRIKEN cDNA A430108G06 gene115345548153458140Mouse
1614902Sowahasosondowah ankyrin repeat domain family member A115336740553371022Mouse
733900Rad50RAD50 double strand break repair protein115354034653598146Mouse
1610940Gm11186predicted gene 11186115300227853010883Mouse
1614082Or2y6olfactory receptor family 2 subfamily Y member 6115210387952104814Mouse
1314198Tcf7transcription factor 7, T cell specific115213734752174211Mouse
1332376Cdkn2aipnlCDKN2A interacting protein N-terminal like115185845851868163Mouse
1331885Rmnd5brequired for meiotic nuclear division 5 homolog B115151450051526723Mouse
1617390Or2y8olfactory receptor family 2 subfamily Y member 8115203542052036355Mouse
1315817Trappc2btrafficking protein particle complex 2B115157620751579929Mouse
1618851Leap2liver-expressed antimicrobial peptide 2115331300853313963Mouse
1620545Or2y7olfactory receptor family 2 subfamily Y member 7115204570352048734Mouse
1319801Sec24aSEC24 homolog A, COPII coat complex component115158309051649172Mouse
1318079N4bp3NEDD4 binding protein 3115153390851541664Mouse
243048405LOC128981863CapStarr-seq enhancer MGSCv37_chr11:52152988-52153277115223026652230761Mouse
1622610Cyclcyclin-like115343902553439324Mouse
1552649Fstl4follistatin-like 4115265532053083277Mouse
1553808Aff4AF4/FMR2 family, member 4115324080753312657Mouse
69009Il13interleukin 13115352215053525529Mouse
736580Gdf9growth differentiation factor 9115332177353328731Mouse
1332440Shroom1shroom family member 1115334790453358593Mouse
734012Ube2bubiquitin-conjugating enzyme E2B115187596551894972Mouse
2295541Rps2-ps4ribosomal protein S2, pseudogene 4115353656253537244Mouse
2295630Gm12209predicted gene 12209115236813952372111Mouse
2294471Rpl9-ps3ribosomal protein L9, pseudogene 3115339196653392688Mouse
2294566Gm11189predicted gene 11189115309148853092778Mouse
4888684Mir3061microRNA 3061115201757352017663Mouse
5139586Gm19835predicted gene, 19835115337391153378582Mouse
9626055Gm30058predicted gene, 30058115154291751547917Mouse
9631637Gm30110predicted gene, 30110115174627351747424Mouse
9614196Gm30366predicted gene, 30366115247037952554699Mouse
9618419Gm30525predicted gene, 30525115319353753198673Mouse
9611709Gm30217predicted gene, 30217115219831152209547Mouse
9669949Mir6920microRNA 6920115330002453300094Mouse
9663727Gm30631predicted gene, 30631115200731352007835Mouse
9661392Gm10447predicted gene 10447115334331953346858Mouse
9641018Gm32048predicted gene, 32048115325605953258276Mouse
10018574Gm39821predicted gene, 39821115177485651779868Mouse
10002652Gm12206predicted gene 12206115207798252081585Mouse
10018440Gm39822predicted gene, 39822115178813951800451Mouse
10007244Gm39823predicted gene, 39823115259660652597872Mouse
10037005Gm39820predicted gene, 39820115175313551760639Mouse
12796212Gm46281predicted gene, 46281115177988751781107Mouse
15003029Gm25930predicted gene, 25930115328122953281335Mouse
14997704Gm26061predicted gene, 26061115185520951855316Mouse
15555596Gm25291predicted gene, 25291115162860651628749Mouse
39129105Gm53705predicted gene, 53705115207257452072795Mouse
39130802LOC11856794340S ribosomal protein S28-like115237795652378137Mouse
39130439Th2-lcrTh2 cytokine locus control region115353841653563179Mouse
39129222LOC107305670origin of replication in Il13115351769553522987Mouse
39130983LOC114827962VISTA enhancer mm1724115276785152769330Mouse
163674128LOC128926602CapStarr-seq enhancer MGSCv37_chr11:52946269-52946452115302359453023777Mouse
163700068LOC128926599CapStarr-seq enhancer MGSCv37_chr11:52154886-52154995115223221152232320Mouse
163691751LOC128926596CapStarr-seq enhancer MGSCv37_chr11:52096181-52096290115217350652173615Mouse
163691939LOC128926597CapStarr-seq enhancer MGSCv37_chr11:52097872-52098055115217519752175380Mouse
163692354LOC128926595CapStarr-seq enhancer MGSCv37_chr11:52045093-52045276115212241852122601Mouse
163674699LOC128926603STARR-positive B cell enhancer ABC_E2987115319124053191750Mouse
163681078LOC128926600CapStarr-seq enhancer MGSCv37_chr11:52800603-52800790115287792852878115Mouse
163675086LOC128926584STARR-seq mESC enhancer starr_29422115152826351529896Mouse
163692823LOC128926587CapStarr-seq enhancer MGSCv37_chr11:51697614-51697723115177493951775048Mouse
163690419LOC128926585STARR-positive B cell enhancer ABC_E3948115153516451535465Mouse
163670710LOC128926589STARR-positive B cell enhancer ABC_E11478115182963651829936Mouse
163654186LOC128926598CapStarr-seq enhancer MGSCv37_chr11:52132162-52132271115220948752209596Mouse
163661047LOC128926586CapStarr-seq enhancer MGSCv37_chr11:51697260-51697496115177458551774821Mouse
163655342LOC128926588CapStarr-seq enhancer MGSCv37_chr11:51749624-51749825115182694951827293Mouse
163665944LOC128926593CapStarr-seq enhancer MGSCv37_chr11:51775297-51775573115185262251852898Mouse
163655749LOC128926594CapStarr-seq enhancer MGSCv37_chr11:51879429-51879612115195675451956937Mouse
163653501LOC128926591CapStarr-seq enhancer MGSCv37_chr11:51763076-51763185115184040151840510Mouse
163653681LOC128926601CapStarr-seq enhancer MGSCv37_chr11:52942269-52942487115301959453019812Mouse
163663638LOC128926590CapStarr-seq enhancer MGSCv37_chr11:51762773-51762956115184009851840281Mouse
163708205LOC128926592CapStarr-seq enhancer MGSCv37_chr11:51763442-51763752115184076751841077Mouse
163711545LOC128924175STARR-seq mESC enhancer starr_29453115220343452206854Mouse
163711759LOC128926604CapStarr-seq enhancer MGSCv37_chr11:53330337-53330520115340766253407845Mouse
401701253LOC131378850STARR-seq mESC enhancer starr_29438115189278251895871Mouse
401702489LOC131378849STARR-seq mESC enhancer starr_29428115159371251595113Mouse
401702332LOC131378859STARR-seq mESC enhancer starr_29468115253801052540870Mouse
401703131LOC131378858STARR-seq mESC enhancer starr_29466115250093252504272Mouse
401713559LOC131378862STARR-seq mESC enhancer starr_29475115314772153149315Mouse
401710884LOC131378846STARR-seq mESC enhancer starr_29425115155545951556724Mouse
401712466LOC131378860STARR-seq mESC enhancer starr_29473115308619653088836Mouse
401710617LOC131378866STARR-seq mESC enhancer starr_29488115348957153491278Mouse
401707005LOC131378861STARR-seq mESC enhancer starr_29474115309271553094344Mouse
401709355LOC131378851STARR-seq mESC enhancer starr_29439115192257651923768Mouse
401709361LOC131378867STARR-seq mESC enhancer starr_29489115351064753512492Mouse
401707706LOC131378847STARR-seq mESC enhancer starr_29426115155973351561982Mouse
401707955LOC131378865STARR-seq mESC enhancer starr_29486115341834153420050Mouse
401706147LOC131378845STARR-seq mESC enhancer starr_29416115147462551476334Mouse
401704225LOC131378857STARR-seq mESC enhancer starr_29464115237368852375450Mouse
401704092LOC131378856STARR-seq mESC enhancer starr_29458115224736952252597Mouse
401706017LOC131378863STARR-seq mESC enhancer starr_29476115315079253152279Mouse
401704686LOC131378864STARR-seq mESC enhancer starr_29480115320995153211239Mouse
401716569LOC131378853STARR-seq mESC enhancer starr_29444115211765652119610Mouse
401716810LOC131378854STARR-seq mESC enhancer starr_29449115216712252168859Mouse
401716881LOC131378848STARR-seq mESC enhancer starr_29427115157893751580427Mouse
401717272LOC131378852STARR-seq mESC enhancer starr_29443115211446652115743Mouse
401716140LOC131378855STARR-seq mESC enhancer starr_29452115217934052180395Mouse
401832599LOC132441766STARR-positive B cell enhancer ABC_E10673115172434251724642Mouse
401833490LOC132441769STARR-positive B cell enhancer ABC_E8875115197087551971176Mouse
401832334LOC132441774STARR-positive B cell enhancer ABC_E76115332162853321929Mouse
401835549LOC132441765STARR-positive B cell enhancer ABC_E6981115157236051572661Mouse
401835037LOC132441770STARR-positive B cell enhancer ABC_E10674115198929751989597Mouse
401835247LOC132441773STARR-positive B cell enhancer ABC_E3950115228703352287334Mouse
401835627LOC132441764STARR-positive B cell enhancer ABC_E8400115152667851526979Mouse
401839617LOC132441762STARR-positive B cell enhancer ABC_E3947115149763051497931Mouse
401840165LOC132441768STARR-positive B cell enhancer ABC_E5224115182828351828584Mouse
401838074LOC132441763STARR-positive B cell enhancer ABC_E255115151042151510722Mouse
401839149LOC132441772STARR-positive B cell enhancer ABC_E11479115223401352234313Mouse
401841420LOC132441771STARR-positive B cell enhancer ABC_E8401115212264352122944Mouse
401842097LOC132441767STARR-positive B cell enhancer mm9_chr11:51671514-51671815115174883951749140Mouse

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
10053675Eae44b_mexperimental allergic encephalomyelitis susceptibility 44b (mouse)Not determined113995072854094448Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
1300713Vmbic10_mventral midbrain iron content 10 (mouse)Not determined114277262654081064Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
4141770Tcpm1_mT-cell phenotype modifier 1 (mouse)Not determined5145247953615930Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse


Additional Information

Database Acc Id Source(s)
MGD MGI:108026 MouseQtl

RGD Curation Notes
Note Type Note Reference