GWAS1006950_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS1006950_H (BMI-adjusted waist circumference QTL GWAS1006950 (human)) Homo sapiens

Symbol: GWAS1006950_H
Name: BMI-adjusted waist circumference QTL GWAS1006950 (human)
RGD ID: 407357974
Trait: BMI-adjusted waist circumference
LOD Score: Not Available
P Value: 1.0E-17
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381573,943,363 - 73,943,364RGD_MAPPER_PIPELINEGRCh38
GRCh371574,235,704 - 74,235,705RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1006950_HHumanBMI-adjusted waist circumference  IAGPrs11631579405850206 GWAS_CATALOGPMID:34021172
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1318705LOXL1lysyl oxidase like 1157392646273952136Human

Position Markers

Peak: (rs11631579)
Human AssemblyChrPosition (strand)Source
GRCh381573,943,363 - 73,943,364RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407357974GWAS1006950_HBMI-adjusted waist circumference QTL GWAS1006950 (human)1e-17BMI-adjusted waist circumference157394336373943364Human
407328335GWAS977311_HBMI-adjusted waist circumference QTL GWAS977311 (human)4e-08BMI-adjusted waist circumference157394336373943364Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS977311_H GCST90020024 A body shape index 219,872 British ancestry women G NR 4E-8 7.398 rs11631579 0.0157253 BMI-adjusted waist circumference (EFO:0007789)
 PMID:34021172
GWAS1006950_H GCST90020029 Waist circumference adjusted for body mass index 219,872 British ancestry women G NR 1E-17 17 rs11631579 0.0244568 BMI-adjusted waist circumference (EFO:0007789)
 PMID:34021172
Database Acc Id Source(s)
GWAS Catalog GCST90020029 GWAS Catalog

RGD Curation Notes
Note Type Note Reference