GWAS983341_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS983341_H (platelet component distribution width QTL GWAS983341 (human)) Homo sapiens

Symbol: GWAS983341_H
Name: platelet component distribution width QTL GWAS983341 (human)
RGD ID: 407334365
Trait: platelet component distribution width
Measurement Type: platelet distribution width   (CMO:0001350)    
LOD Score: Not Available
P Value: 9.0E-73
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38124,705,677 - 24,705,678RGD_MAPPER_PIPELINEGRCh38
GRCh37125,032,168 - 25,032,169RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS983341_HHumanplatelet distribution width  IAGPrs66530629405850206Based on the EFO term IDGWAS_CATALOGPMID:32888494

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS983341_HHumanplatelet component distribution width  IAGPrs66530629405850206 GWAS_CATALOGPMID:32888494
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs66530629)
Human AssemblyChrPosition (strand)Source
GRCh38124,705,677 - 24,705,678RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
407125632GWAS774608_Hplatelet crit QTL GWAS774608 (human)2e-13platelet critplateletcrit (CMO:0001349)12470567724705678Human
407334365GWAS983341_Hplatelet component distribution width QTL GWAS983341 (human)9e-73platelet component distribution widthplatelet distribution width (CMO:0001350)12470567724705678Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS774608_H GCST004607 Plateletcrit 164,339 European ancestry individuals A 0.2497 2E-13 12.699 rs66530629 0.03107871 platelet crit (EFO:0007985)
 PMID:27863252
GWAS983341_H GCST90002401 Platelet distribution width 408,112 British individuals A 0.250942 9E-73 72.046 rs66530629 0.04634096 platelet component distribution width (EFO:0007984)
 PMID:32888494
Database Acc Id Source(s)
GWAS Catalog GCST90002401 GWAS Catalog

RGD Curation Notes
Note Type Note Reference