GWAS979727_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS979727_H (HbA1c measurement QTL GWAS979727 (human)) Homo sapiens

Symbol: GWAS979727_H
Name: HbA1c measurement QTL GWAS979727 (human)
RGD ID: 407330751
Trait: HbA1c measurement
Measurement Type: blood hemoglobin A1c level   (CMO:0002786)    
LOD Score: Not Available
P Value: 3.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381092,614,846 - 92,614,847RGD_MAPPER_PIPELINEGRCh38
GRCh371094,374,603 - 94,374,604RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS979727_HHumanblood hemoglobin A1c level  IAGPrs11187097405850206Based on the EFO term IDGWAS_CATALOGPMID:33462484

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS979727_HHumanHbA1c measurement  IAGPrs11187097405850206 GWAS_CATALOGPMID:33462484
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1346274KIF11kinesin family member 11109259313092655395Human

Position Markers

Peak: (rs11187097)
Human AssemblyChrPosition (strand)Source
GRCh381092,614,846 - 92,614,847RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2314551GLUCO52_HGlucose level QTL 52 (human)1.4Glucose level1077605006103605006Human
407330751GWAS979727_HHbA1c measurement QTL GWAS979727 (human)3e-09HbA1c measurementblood hemoglobin A1c level (CMO:0002786)109261484692614847Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS979727_H GCST90019509 Glycated hemoglobin levels 327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals C NR 3E-9 8.523 rs11187097 0.0228 HbA1c measurement (EFO:0004541)
 PMID:33462484
Database Acc Id Source(s)
GWAS Catalog GCST90019509 GWAS Catalog

RGD Curation Notes
Note Type Note Reference