GWAS972685_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS972685_H (educational attainment QTL GWAS972685 (human)) Homo sapiens

Symbol: GWAS972685_H
Name: educational attainment QTL GWAS972685 (human)
RGD ID: 407323709
Trait: educational attainment
LOD Score: Not Available
P Value: 4.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38111,879,663 - 11,879,664RGD_MAPPER_PIPELINEGRCh38
GRCh37111,939,720 - 11,939,721RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS972685_HHumaneducational attainment  IAGPrs28455075405850206 GWAS_CATALOGPMID:35361970
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
14989562SBF1P2SBF1 pseudogene 211187776911880758Human

Position Markers

Peak: (rs28455075)
Human AssemblyChrPosition (strand)Source
GRCh38111,879,663 - 11,879,664RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
407323709GWAS972685_Heducational attainment QTL GWAS972685 (human)4e-11educational attainment11187966311879664Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS972685_H GCST90105038 Educational attainment 3,037,499 European ancestry individuals A 0.3106 4E-11 10.398 rs28455075 0.0075275 educational attainment (EFO:0011015)
 PMID:35361970
Database Acc Id Source(s)
GWAS Catalog GCST90105038 GWAS Catalog

RGD Curation Notes
Note Type Note Reference