GWAS962311_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS962311_H (eye morphology measurement QTL GWAS962311 (human)) Homo sapiens

Symbol: GWAS962311_H
Name: eye morphology measurement QTL GWAS962311 (human)
RGD ID: 407313335
Trait: eye morphology measurement
Measurement Type: eye morphological measurement   (CMO:0003080)    
LOD Score: Not Available
P Value: 5.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38123,104,157 - 23,104,158RGD_MAPPER_PIPELINEGRCh38
GRCh37123,430,650 - 23,430,651RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS962311_HHumaneye morphological measurement  IAGPrs79891104405850206Based on the EFO term IDGWAS_CATALOGPMID:34791242

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS962311_HHumaneye morphology measurement  IAGPrs79891104405850206 GWAS_CATALOGPMID:34791242
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
736317LUZP1leucine zipper protein 112308364223178122Human

Position Markers

Peak: (rs79891104)
Human AssemblyChrPosition (strand)Source
GRCh38123,104,157 - 23,104,158RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
407313335GWAS962311_Heye morphology measurement QTL GWAS962311 (human)5e-12eye morphology measurementeye morphological measurement (CMO:0003080)12310415723104158Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS962311_H GCST90239648 Orbital telorism 34,130 European ancestry individuals ? NR 5E-12 11.302 rs79891104 0.1911 eye morphology measurement (EFO:0007858)
 PMID:34791242
None Available GCST90435412 Height 404,900 European ancestry individuals ? NR 8E-19 18.097 rs79891104 0.0201863 body height (EFO:0004339)
 PMID:39134668
Database Acc Id Source(s)
GWAS Catalog GCST90239648 GWAS Catalog

RGD Curation Notes
Note Type Note Reference