GWAS920223_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS920223_H (body height QTL GWAS920223 (human)) Homo sapiens

Symbol: GWAS920223_H
Name: body height QTL GWAS920223 (human)
RGD ID: 407271247
Trait: body height   (VT:0001253)    
Measurement Type: body height   (CMO:0000106)    
LOD Score: Not Available
P Value: 1.0E-25
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38273,901,306 - 73,901,307RGD_MAPPER_PIPELINEGRCh38
GRCh37274,128,433 - 74,128,434RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS920223_HHumanbody height  IAGPrs1050146405850206Based on the EFO term IDGWAS_CATALOGPMID:36224396

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS920223_HHumanbody height  IAGPrs1050146405850206Based on the EFO term IDGWAS_CATALOGPMID:36224396

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS920223_HHumanbody height  IAGPrs1050146405850206 GWAS_CATALOGPMID:36224396
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement
body height  (IAGP)

Vertebrate Trait
body height  (IAGP)

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
737318ACTG2actin gamma 2, smooth muscle27389300873919865Human

Position Markers

Peak: (rs1050146)
Human AssemblyChrPosition (strand)Source
GRCh38273,901,306 - 73,901,307RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407271247GWAS920223_Hbody height QTL GWAS920223 (human)1e-25body height (VT:0001253)body height (CMO:0000106)27390130673901307Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS920223_H GCST90245848 Height 5,314,291 European ancestry, Hispanic or Latin American, East Asian ancestry, African ancestry, South Asian ancestry individuals C 0.2327 1E-25 25 rs1050146 0.0079 body height (EFO:0004339)
 PMID:36224396
Database Acc Id Source(s)
GWAS Catalog GCST90245848 GWAS Catalog

RGD Curation Notes
Note Type Note Reference