GWAS911692_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS911692_H (phospholipase A2, membrane associated measurement QTL GWAS911692 (human)) Homo sapiens

Symbol: GWAS911692_H
Name: phospholipase A2, membrane associated measurement QTL GWAS911692 (human)
RGD ID: 407262716
Trait: phospholipase A2, membrane associated measurement
LOD Score: Not Available
P Value: 4E-138
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38119,965,513 - 19,965,514RGD_MAPPER_PIPELINEGRCh38
GRCh37120,292,006 - 20,292,007RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS911692_HHumanphospholipase A2, membrane associated measurement  IAGPrs12023742405850206 GWAS_CATALOGPMID:31070471
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs12023742)
Human AssemblyChrPosition (strand)Source
GRCh38119,965,513 - 19,965,514RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
407289121GWAS938097_Hphospholipase A2, membrane associated measurement QTL GWAS938097 (human)3e-36phospholipase A2, membrane associated measurement11996551319965514Human
407262716GWAS911692_Hphospholipase A2, membrane associated measurement QTL GWAS911692 (human)4e-138phospholipase A2, membrane associated measurement11996551319965514Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS911692_H GCST008260 Group IIA secretory phospholipase A2 levels in individuals with elevated hsCRP 6,692 European ancestry individuals A 0.38 4E-138 137.398 rs12023742 1.15 phospholipase A2, membrane associated measurement (EFO:0008259)
 PMID:31070471
GWAS938097_H GCST90161430 Phospholipase A2, membrane associated levels 2,935 Qatari ancestry individuals A 0.375468 3E-36 35.523 rs12023742 0.356767 phospholipase A2, membrane associated measurement (EFO:0008259)
 PMID:36168886
Database Acc Id Source(s)
GWAS Catalog GCST008260 GWAS Catalog

RGD Curation Notes
Note Type Note Reference