GWAS904257_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS904257_H (pulse pressure measurement QTL GWAS904257 (human)) Homo sapiens

Symbol: GWAS904257_H
Name: pulse pressure measurement QTL GWAS904257 (human)
RGD ID: 407255281
Trait: pulse pressure measurement
Measurement Type: pulse pressure   (CMO:0000292)    
LOD Score: Not Available
P Value: 9.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38111,862,241 - 11,862,242RGD_MAPPER_PIPELINEGRCh38
GRCh37111,922,298 - 11,922,299RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS904257_HHumanpulse pressure  IAGPrs6668659405850206Based on the EFO term IDGWAS_CATALOGPMID:38459180

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS904257_HHumanpulse pressure measurement  IAGPrs6668659405850206 GWAS_CATALOGPMID:38459180
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement
pulse pressure  (IAGP)

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs6668659)
Human AssemblyChrPosition (strand)Source
GRCh38111,862,241 - 11,862,242RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
407255281GWAS904257_Hpulse pressure measurement QTL GWAS904257 (human)9e-10pulse pressure measurementpulse pressure (CMO:0000292)11186224111862242Human
407264095GWAS913071_Hpulse pressure measurement QTL GWAS913071 (human)1e-11pulse pressure measurementpulse pressure (CMO:0000292)11186224111862242Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
407375973GWAS1024949_Hpulse pressure measurement, alcohol drinking QTL GWAS1024949 (human)1e-17pulse pressure measurement, alcohol drinkingpulse pressure (CMO:0000292)11186224111862242Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS904257_H GCST90301702 Pulse pressure 174,664 British ancestry females T NR 9E-10 9.046 rs6668659 0.02 pulse pressure measurement (EFO:0005763)
 PMID:38459180
GWAS913071_H GCST90301701 Pulse pressure 349,328 British ancestry individuals T NR 1E-11 11 rs6668659 0.02 pulse pressure measurement (EFO:0005763)
 PMID:38459180
GWAS1024949_H GCST006168 Pulse pressure x alcohol consumption interaction (2df test) 91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers T 0.65 1E-17 17 rs6668659 N/A pulse pressure measurement (EFO:0005763)
alcohol drinking (EFO:0004329)
 PMID:29912962
Database Acc Id Source(s)
GWAS Catalog GCST90301702 GWAS Catalog

RGD Curation Notes
Note Type Note Reference