GWAS870828_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS870828_H (blood protein measurement QTL GWAS870828 (human)) Homo sapiens

Symbol: GWAS870828_H
Name: blood protein measurement QTL GWAS870828 (human)
RGD ID: 407221852
Trait: blood protein measurement
Measurement Type: blood protein measurement   (CMO:0000028)    
LOD Score: Not Available
P Value: 2.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3812,298,478 - 2,298,479RGD_MAPPER_PIPELINEGRCh38
GRCh3712,229,917 - 2,229,918RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS870828_HHumanblood protein measurement  IAGPrs72642137405850206Based on the EFO term IDGWAS_CATALOGPMID:38412862

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS870828_HHumanblood protein measurement  IAGPrs72642137405850206 GWAS_CATALOGPMID:38412862
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1342955SKISKI proto-oncogene122283192310213Human
155633598LOC127266910H3K4me1 hESC enhancer GRCh37_chr1:2229847-2230358122984082298919Human

Position Markers

Peak: (rs72642137)
Human AssemblyChrPosition (strand)Source
GRCh3812,298,478 - 2,298,479RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
407217988GWAS866964_Hblood protein measurement QTL GWAS866964 (human)5e-19blood protein measurementblood protein measurement (CMO:0000028)122984782298479Human
407181005GWAS829981_Hblood protein measurement QTL GWAS829981 (human)2e-14blood protein measurementblood protein measurement (CMO:0000028)122984782298479Human
407235820GWAS884796_Hblood protein measurement QTL GWAS884796 (human)1e-15blood protein measurementblood protein measurement (CMO:0000028)122984782298479Human
407117518GWAS766494_Hblood protein measurement QTL GWAS766494 (human)7e-21blood protein measurementblood protein measurement (CMO:0000028)122984782298479Human
407093736GWAS742712_Hblood protein measurement QTL GWAS742712 (human)4e-24blood protein measurementblood protein measurement (CMO:0000028)122984782298479Human
407218094GWAS867070_Hblood protein measurement QTL GWAS867070 (human)8e-22blood protein measurementblood protein measurement (CMO:0000028)122984782298479Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
407180297GWAS829273_Hblood protein measurement QTL GWAS829273 (human)1e-16blood protein measurementblood protein measurement (CMO:0000028)122984782298479Human
407078125GWAS727101_Hblood protein measurement QTL GWAS727101 (human)7e-17blood protein measurementblood protein measurement (CMO:0000028)122984782298479Human
407214763GWAS863739_Hblood protein measurement QTL GWAS863739 (human)6e-14blood protein measurementblood protein measurement (CMO:0000028)122984782298479Human
407234900GWAS883876_Hblood protein measurement QTL GWAS883876 (human)1e-19blood protein measurementblood protein measurement (CMO:0000028)122984782298479Human
407131831GWAS780807_Hblood protein measurement QTL GWAS780807 (human)3e-18blood protein measurementblood protein measurement (CMO:0000028)122984782298479Human
407220433GWAS869409_Hblood protein measurement QTL GWAS869409 (human)1e-25blood protein measurementblood protein measurement (CMO:0000028)122984782298479Human
407083131GWAS732107_Hblood protein measurement QTL GWAS732107 (human)4e-15blood protein measurementblood protein measurement (CMO:0000028)122984782298479Human
407221852GWAS870828_Hblood protein measurement QTL GWAS870828 (human)2e-13blood protein measurementblood protein measurement (CMO:0000028)122984782298479Human
407186078GWAS835054_Hblood protein measurement QTL GWAS835054 (human)2e-20blood protein measurementblood protein measurement (CMO:0000028)122984782298479Human
407175640GWAS824616_Hblood protein measurement QTL GWAS824616 (human)5e-20blood protein measurementblood protein measurement (CMO:0000028)122984782298479Human
407210872GWAS859848_Hblood protein measurement QTL GWAS859848 (human)1e-20blood protein measurementblood protein measurement (CMO:0000028)122984782298479Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS727101_H GCST90315906 TBC1D23/VASH1 protein level ratio 43,509 European ancestry individuals ? NR 7E-17 16.155 rs72642137 0.0721751 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS732107_H GCST90314427 DBNL/VASH1 protein level ratio 43,509 European ancestry individuals ? NR 4E-15 14.398 rs72642137 0.0675244 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS742712_H GCST90314837 FKBP1B/VASH1 protein level ratio 43,509 European ancestry individuals ? NR 4E-24 23.398 rs72642137 0.0867715 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS766494_H GCST90314061 CHMP1A/VASH1 protein level ratio 43,509 European ancestry individuals ? NR 7E-21 20.155 rs72642137 0.0810689 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS780807_H GCST90314627 EIF4B/VASH1 protein level ratio 43,509 European ancestry individuals ? NR 3E-18 17.523 rs72642137 0.0752177 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS824616_H GCST90315142 IKBKG/NFATC1 protein level ratio 43,509 European ancestry individuals ? NR 5E-20 19.302 rs72642137 0.0776084 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS829273_H GCST90315181 INPPL1/NFATC1 protein level ratio 43,509 European ancestry individuals ? NR 1E-16 16 rs72642137 0.0709245 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS829981_H GCST90315686 PLXNA4/SNAP29 protein level ratio 43,509 European ancestry individuals ? NR 2E-14 13.699 rs72642137 0.0661768 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS835054_H GCST90315945 VASH1/YTHDF3 protein level ratio 43,509 European ancestry individuals ? NR 2E-20 19.699 rs72642137 0.0806604 blood protein measurement (EFO:0007937)
 PMID:38412862
None Available GCST90315201 IRAK4/VASH1 protein level ratio 43,509 European ancestry individuals ? NR 7E-21 20.155 rs72642137 0.0800161 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS859848_H GCST90315425 MESD/VASH1 protein level ratio 43,509 European ancestry individuals ? NR 1E-20 20 rs72642137 0.0804413 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS863739_H GCST90313633 CASP3/HPCAL1 protein level ratio 43,509 European ancestry individuals ? NR 6E-14 13.222 rs72642137 0.0641356 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS866964_H GCST90314100 CLEC1B/PLXNA4 protein level ratio 43,509 European ancestry individuals ? NR 5E-19 18.302 rs72642137 0.0765105 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS867070_H GCST90315526 NCK2/VASH1 protein level ratio 43,509 European ancestry individuals ? NR 8E-22 21.097 rs72642137 0.0825229 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS869409_H GCST90315289 LAT/VASH1 protein level ratio 43,509 European ancestry individuals ? NR 1E-25 25 rs72642137 0.0895763 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS870828_H GCST90315540 NFATC1/TJAP1 protein level ratio 43,509 European ancestry individuals ? NR 2E-13 12.699 rs72642137 0.0629712 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS883876_H GCST90314369 DAB2/VASH1 protein level ratio 43,509 European ancestry individuals ? NR 1E-19 19 rs72642137 0.0777811 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS884796_H GCST90314402 DAPP1/VASH1 protein level ratio 43,509 European ancestry individuals ? NR 1E-15 15 rs72642137 0.0684295 blood protein measurement (EFO:0007937)
 PMID:38412862
Database Acc Id Source(s)
GWAS Catalog GCST90315540 GWAS Catalog

RGD Curation Notes
Note Type Note Reference