GWAS870494_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS870494_H (fructose measurement, glucose measurement, galactose measurement QTL GWAS870494 (human)) Homo sapiens

Symbol: GWAS870494_H
Name: fructose measurement, glucose measurement, galactose measurement QTL GWAS870494 (human)
RGD ID: 407221518
Trait: fructose absorption trait   (VT:0001668)    
Measurement Type: blood glucose level   (CMO:0000046)    
LOD Score: Not Available
P Value: 5.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381353,805,322 - 53,805,323RGD_MAPPER_PIPELINEGRCh38
GRCh371354,379,457 - 54,379,458RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS870494_HHumanblood glucose level  IAGPrs4632022405850206Based on the EFO term IDGWAS_CATALOGPMID:23823483

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS870494_HHumanfructose absorption trait  IAGPrs4632022405850206Based on the EFO term IDGWAS_CATALOGPMID:23823483

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS870494_HHumanfructose measurement  IAGPrs4632022405850206 GWAS_CATALOGPMID:23823483
GWAS870494_HHumangalactose measurement  IAGPrs4632022405850206 GWAS_CATALOGPMID:23823483
GWAS870494_HHumanglucose measurement  IAGPrs4632022405850206 GWAS_CATALOGPMID:23823483
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Vertebrate Trait

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs4632022)
Human AssemblyChrPosition (strand)Source
GRCh381353,805,322 - 53,805,323RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2292823PRSTS88_HProstate tumor susceptibility QTL 88 (human)Prostate tumor susceptibility134153205867532058Human
2289192BW359_HBody weight QTL 359 (human)0.0344Body fat amountpercent fat134998940475989404Human
1643298BW212_HBody weight QTL 212 (human)2.670.0002Body weightBMI134153205867532058Human
407221518GWAS870494_Hfructose measurement, glucose measurement, galactose measurement QTL GWAS870494 (human)0.000005fructose absorption trait (VT:0001668)blood glucose level (CMO:0000046)135380532253805323Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS870494_H GCST009391 Metabolite levels 2,076 European ancestry individuals ? NR 0.000005 5.302 rs4632022 0.22225581 fructose measurement (EFO:0010477)
glucose measurement (EFO:0004468)
galactose measurement (EFO:0010481)
 PMID:23823483
Database Acc Id Source(s)
GWAS Catalog GCST009391 GWAS Catalog

RGD Curation Notes
Note Type Note Reference