GWAS855774_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS855774_H (glomerular filtration rate QTL GWAS855774 (human)) Homo sapiens

Symbol: GWAS855774_H
Name: glomerular filtration rate QTL GWAS855774 (human)
RGD ID: 407206798
Trait: glomerular filtration rate
Measurement Type: glomerular filtration rate   (CMO:0000490)    
LOD Score: Not Available
P Value: 2.0E-24
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38115,542,197 - 15,542,198RGD_MAPPER_PIPELINEGRCh38
GRCh37115,868,692 - 15,868,693RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS855774_HHumanglomerular filtration rate  IAGPrs7516435405850206Based on the EFO term IDGWAS_CATALOGPMID:34272381

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS855774_HHumanglomerular filtration rate  IAGPrs7516435405850206 GWAS_CATALOGPMID:34272381
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1603691DNAJC16DnaJ heat shock protein family (Hsp40) member C1611552684815571733Human
12743460SCARNA21Bsmall Cajal body-specific RNA 21B11554216615542304Human

Position Markers

Peak: (rs7516435)
Human AssemblyChrPosition (strand)Source
GRCh38115,542,197 - 15,542,198RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
407206798GWAS855774_Hglomerular filtration rate QTL GWAS855774 (human)2e-24glomerular filtration rateglomerular filtration rate (CMO:0000490)11554219715542198Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS855774_H GCST90103634 Estimated glomerular filtration rate (creatinine) 1,004,040 European ancestry individuals G 0.3116 2E-24 23.699 rs7516435 0.0030607 glomerular filtration rate (EFO:0005208)
 PMID:34272381
Database Acc Id Source(s)
GWAS Catalog GCST90103634 GWAS Catalog

RGD Curation Notes
Note Type Note Reference