GWAS840146_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS840146_H (hematocrit QTL GWAS840146 (human)) Homo sapiens

Symbol: GWAS840146_H
Name: hematocrit QTL GWAS840146 (human)
RGD ID: 407191170
Trait: hematocrit
Measurement Type: hematocrit   (CMO:0000037)    
LOD Score: Not Available
P Value: 5.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381845,737,934 - 45,737,935RGD_MAPPER_PIPELINEGRCh38
GRCh371843,317,899 - 43,317,900RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS840146_HHumanhematocrit  IAGPrs12608098405850206Based on the EFO term IDGWAS_CATALOGPMID:34594039

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS840146_HHumanhematocrit  IAGPrs12608098405850206 GWAS_CATALOGPMID:34594039
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement
hematocrit  (IAGP)

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
38661747LOC105372093uncharacterized LOC105372093184560633645782836Human
1354455SLC14A1solute carrier family 14 member 1 (Kidd blood group)184572418145752520Human

Position Markers

Peak: (rs12608098)
Human AssemblyChrPosition (strand)Source
GRCh381845,737,934 - 45,737,935RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407191170GWAS840146_Hhematocrit QTL GWAS840146 (human)5e-09hematocrithematocrit (CMO:0000037)184573793445737935Human
407272353GWAS921329_Hhematocrit QTL GWAS921329 (human)5e-11hematocrithematocrit (CMO:0000037)184573793445737935Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS840146_H GCST90018740 Hematocrit 153,015 East Asian ancestry individuals T 0.387162 5E-9 8.302 rs12608098 0.0187489 hematocrit (EFO:0004348)
 PMID:34594039
GWAS921329_H GCST90002305 Hematocrit 142,940 East Asian ancestry individuals C 0.612814 5E-11 10.302 rs12608098 0.025186 hematocrit (EFO:0004348)
 PMID:32888493
Database Acc Id Source(s)
GWAS Catalog GCST90018740 GWAS Catalog

RGD Curation Notes
Note Type Note Reference