GWAS806406_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS806406_H (attempted suicide QTL GWAS806406 (human)) Homo sapiens

Symbol: GWAS806406_H
Name: attempted suicide QTL GWAS806406 (human)
RGD ID: 407157430
Trait: attempted suicide
LOD Score: Not Available
P Value: 1.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38114,069,324 - 14,069,325RGD_MAPPER_PIPELINEGRCh38
GRCh37114,395,819 - 14,395,820RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS806406_HHumanattempted suicide  IAGPrs76347430405850206 GWAS_CATALOGPMID:31164008
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1604041KAZNkazrin, periplakin interacting protein11389282415118043Human

Position Markers

Peak: (rs76347430)
Human AssemblyChrPosition (strand)Source
GRCh38114,069,324 - 14,069,325RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
407157430GWAS806406_Hattempted suicide QTL GWAS806406 (human)0.000001attempted suicide11406932414069325Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS806406_H GCST008118 Suicide attempts in major depressive disorder 1,622 European ancestry attempters, 8,786 European ancestry nonattempters G 0.020000000000000018 0.000001 6 rs76347430 2.0 attempted suicide (EFO:0004321)
 PMID:31164008
Database Acc Id Source(s)
GWAS Catalog GCST008118 GWAS Catalog

RGD Curation Notes
Note Type Note Reference