GWAS801681_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS801681_H (breast carcinoma QTL GWAS801681 (human)) Homo sapiens

Symbol: GWAS801681_H
Name: breast carcinoma QTL GWAS801681 (human)
RGD ID: 407152705
Trait: breast carcinoma
LOD Score: Not Available
P Value: 3.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3811803,017 - 803,018RGD_MAPPER_PIPELINEGRCh38
GRCh3711803,017 - 803,018RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1323429PIDD1p53-induced death domain protein 111799184809501Human

Position Markers

Peak: (rs6597981)
Human AssemblyChrPosition (strand)Source
GRCh3811803,017 - 803,018RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558691SCL8_HSerum cholesterol level QTL 8 (human)1.2Lipid levelHDL cholesterol1115227071Human
407152705GWAS801681_Hbreast carcinoma QTL GWAS801681 (human)3e-12breast carcinoma11803017803018Human
406896956GWAS545932_Hbreast carcinoma QTL GWAS545932 (human)1e-12breast carcinoma11803017803018Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS545932_H GCST004988 Breast cancer 76,192 European ancestry cases, 63,082 European ancestry controls G 0.52 1E-12 12 rs6597981 1.0416667 breast carcinoma (EFO:0000305)
 PMID:29059683
GWAS801681_H GCST90090980 Breast cancer 24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls A NR 3E-12 11.523 rs6597981 0.96 breast carcinoma (EFO:0000305)
 PMID:32139696
Database Acc Id Source(s)
GWAS Catalog GCST90090980 GWAS Catalog

RGD Curation Notes
Note Type Note Reference