GWAS800544_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS800544_H (esterified cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS800544 (human)) Homo sapiens

Symbol: GWAS800544_H
Name: esterified cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS800544 (human)
RGD ID: 407151568
Trait: esterified cholesterol measurement, low density lipoprotein cholesterol measurement
LOD Score: Not Available
P Value: 3.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381919,255,823 - 19,255,824RGD_MAPPER_PIPELINEGRCh38
GRCh371919,366,632 - 19,366,633RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1348635HAPLN4hyaluronan and proteoglycan link protein 4191925475619262804Human

Position Markers

Peak: (rs72999033)
Human AssemblyChrPosition (strand)Source
GRCh381919,255,823 - 19,255,824RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
596970133GWAS1089652_Hfree cholesterol measurement, intermediate density lipoprotein measurement QTL GWAS1089652 (human)3e-08free cholesterol measurement, intermediate density lipoprotein measurement191925582319255824Human
597046295GWAS1142369_Herythrocyte count QTL GWAS1142369 (human)2e-16cholesterol:total lipids ratio, low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)191925582319255824Human
596970134GWAS1089653_Hlipid measurement, intermediate density lipoprotein measurement QTL GWAS1089653 (human)6e-12lipid measurement, intermediate density lipoprotein measurement191925582319255824Human
597222813GWAS1318887_Hlow density lipoprotein cholesterol measurement, phospholipid measurement QTL GWAS1318887 (human)1e-11low density lipoprotein cholesterol measurement, phospholipid measurementblood lipid measurement (CMO:0000050)191925582319255824Human
597226654GWAS1322728_Hintermediate density lipoprotein measurement QTL GWAS1322728 (human)3e-11intermediate density lipoprotein measurement191925582319255824Human
596970013GWAS1089532_Hintermediate density lipoprotein measurement QTL GWAS1089532 (human)3e-11intermediate density lipoprotein measurement191925582319255824Human
597293841GWAS1389915_Hceramide measurement QTL GWAS1389915 (human)0.000002ceramide measurement191925582319255824Human
597297426GWAS1393500_Hceramide measurement QTL GWAS1393500 (human)0.0000003ceramide measurement191925582319255824Human
597618196GWAS1675056_Hportal hypertension QTL GWAS1675056 (human)1e-20portal hypertension191925582319255824Human
597226003GWAS1322077_Hlow density lipoprotein cholesterol measurement QTL GWAS1322077 (human)5e-12low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)191925582319255824Human
597283730GWAS1379804_Hlow density lipoprotein cholesterol measurement, cholesteryl esters:total lipids ratio QTL GWAS1379804 (human)2e-22low density lipoprotein cholesterol measurement, cholesteryl esters:total lipids ratioblood low density lipoprotein cholesterol level (CMO:0000053)191925582319255824Human
596969241GWAS1088760_Hlow density lipoprotein cholesterol measurement QTL GWAS1088760 (human)9e-10low density lipoprotein cholesterol measurement191925582319255824Human
407151444GWAS800420_Hlipid measurement, intermediate density lipoprotein measurement QTL GWAS800420 (human)6e-12lipid measurement, intermediate density lipoprotein measurement191925582319255824Human
596969989GWAS1089508_Hfatty acid measurement QTL GWAS1089508 (human)6e-11fatty acid measurement191925582319255824Human
597225610GWAS1321684_Hesterified cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS1321684 (human)3e-12esterified cholesterol measurement, low density lipoprotein cholesterol measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)191925582319255824Human
407151568GWAS800544_Hesterified cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS800544 (human)3e-12esterified cholesterol measurement, intermediate density lipoprotein measurement191925582319255824Human
597220109GWAS1316183_Hfree cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS1316183 (human)6e-09free cholesterol measurement, low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)191925582319255824Human
407150162GWAS799138_Hlipid measurement, intermediate density lipoprotein measurement QTL GWAS799138 (human)4e-12low density lipoprotein cholesterol measurement191925582319255824Human
407150163GWAS799139_Hintermediate density lipoprotein measurement QTL GWAS799139 (human)1e-12free cholesterol measurement191925582319255824Human
597220111GWAS1316185_Hlow density lipoprotein cholesterol measurement, lipid measurement QTL GWAS1316185 (human)1e-10cholesterol:total lipids ratio, low density lipoprotein cholesterol measurementblood cholesterol level (CMO:0002280)191925582319255824Human
597113344GWAS1209418_Herythrocyte count QTL GWAS1209418 (human)3e-15erythrocyte countred blood cell count (CMO:0000025)191925582319255824Human
596962572GWAS1082091_Hhematocrit QTL GWAS1082091 (human)7e-11hematocrit191925582319255824Human
597244161GWAS1340235_Hlipid measurement, intermediate density lipoprotein measurement QTL GWAS1340235 (human)6e-12lipid measurement, intermediate density lipoprotein measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)191925582319255824Human
597244160GWAS1340234_Hfree cholesterol measurement, intermediate density lipoprotein measurement QTL GWAS1340234 (human)3e-08free cholesterol measurement, intermediate density lipoprotein measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)191925582319255824Human
597289856GWAS1385930_Hcholesterol:total lipids ratio, cholesteryl esters:total lipids ratio QTL GWAS1385930 (human)3e-19cholesterol:total lipids ratio, cholesteryl esters:total lipids ratio191925582319255824Human
596969353GWAS1088872_Hvery low density lipoprotein cholesterol measurement QTL GWAS1088872 (human)2e-11low density lipoprotein cholesterol measurement191925582319255824Human
596969481GWAS1089000_Hlow density lipoprotein cholesterol measurement QTL GWAS1089000 (human)5e-12low density lipoprotein cholesterol measurement191925582319255824Human
596969480GWAS1088999_Hlow density lipoprotein cholesterol measurement, lipid measurement QTL GWAS1088999 (human)9e-12intermediate density lipoprotein measurement191925582319255824Human
407151451GWAS800427_Hphospholipid measurement, intermediate density lipoprotein measurement QTL GWAS800427 (human)7e-11hematocrit191925582319255824Human
596970122GWAS1089641_Hfree cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS1089641 (human)2e-08free cholesterol measurement, low density lipoprotein cholesterol measurement191925582319255824Human
597311930GWAS1408004_HHMG CoA reductase inhibitor use measurement QTL GWAS1408004 (human)2e-26HMG CoA reductase inhibitor use measurement191925582319255824Human
597292216GWAS1388290_Hceramide measurement QTL GWAS1388290 (human)0.000005ceramide measurement191925582319255824Human
597219001GWAS1315075_Hlow density lipoprotein cholesterol measurement QTL GWAS1315075 (human)2e-09low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)191925582319255824Human
597221690GWAS1317764_Hlow density lipoprotein cholesterol measurement QTL GWAS1317764 (human)4e-11low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)191925582319255824Human
597219002GWAS1315076_Hesterified cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS1315076 (human)1e-09cholesterol:total lipids ratio, low density lipoprotein cholesterol measurementblood total cholesterol level (CMO:0000051)191925582319255824Human
597283261GWAS1379335_HC-reactive protein measurement QTL GWAS1379335 (human)1e-19C-reactive protein measurementblood C-reactive protein level (CMO:0003160)191925582319255824Human
407150690GWAS799666_Hfree cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS799666 (human)2e-08free cholesterol measurement, low density lipoprotein cholesterol measurement191925582319255824Human
597221695GWAS1317769_Hlipid measurement, intermediate density lipoprotein measurement QTL GWAS1317769 (human)4e-12lipid measurement, intermediate density lipoprotein measurementblood low density lipoprotein cholesterol level (CMO:0000053)191925582319255824Human
597616564GWAS1673424_Hesophageal varices QTL GWAS1673424 (human)3e-24esophageal varices191925582319255824Human
596970046GWAS1089565_Hlow density lipoprotein cholesterol measurement QTL GWAS1089565 (human)1e-08low density lipoprotein cholesterol measurement191925582319255824Human
407150697GWAS799673_Hlow density lipoprotein cholesterol measurement QTL GWAS799673 (human)9e-11low density lipoprotein cholesterol measurement191925582319255824Human
597222326GWAS1318400_Hlow density lipoprotein cholesterol measurement QTL GWAS1318400 (human)9e-11low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)191925582319255824Human
407151851GWAS800827_Hlow density lipoprotein cholesterol measurement, lipid measurement QTL GWAS800827 (human)1e-11low density lipoprotein cholesterol measurement, lipid measurement191925582319255824Human
407180023GWAS828999_Hlow density lipoprotein cholesterol measurement QTL GWAS828999 (human)9e-10low density lipoprotein cholesterol measurement191925582319255824Human
596969635GWAS1089154_Hfree cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS1089154 (human)6e-09free cholesterol measurement, low density lipoprotein cholesterol measurement191925582319255824Human
407148925GWAS797901_Hesterified cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS797901 (human)9e-09esterified cholesterol measurement, low density lipoprotein cholesterol measurement191925582319255824Human
597223203GWAS1319277_Hlow density lipoprotein cholesterol measurement, lipid measurement QTL GWAS1319277 (human)5e-11low density lipoprotein cholesterol measurement, lipid measurementblood lipid measurement (CMO:0000050)191925582319255824Human
597223204GWAS1319278_Hlow density lipoprotein cholesterol measurement QTL GWAS1319278 (human)2e-11low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)191925582319255824Human
407148921GWAS797897_Hlow density lipoprotein cholesterol measurement QTL GWAS797897 (human)1e-08low density lipoprotein cholesterol measurement191925582319255824Human
597244760GWAS1340834_Hphospholipid measurement, intermediate density lipoprotein measurement QTL GWAS1340834 (human)7e-11hematocrithematocrit (CMO:0000037)191925582319255824Human
597228124GWAS1324198_Hlow density lipoprotein cholesterol measurement, phospholipid measurement QTL GWAS1324198 (human)2e-12intermediate density lipoprotein measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)191925582319255824Human
596969808GWAS1089327_Hesterified cholesterol measurement QTL GWAS1089327 (human)5e-11esterified cholesterol measurement191925582319255824Human
597218398GWAS1314472_Hesterified cholesterol measurement QTL GWAS1314472 (human)9e-12intermediate density lipoprotein measurementblood lipid measurement (CMO:0000050)191925582319255824Human
407151247GWAS800223_Hlow density lipoprotein cholesterol measurement, phospholipid measurement QTL GWAS800223 (human)2e-12intermediate density lipoprotein measurement191925582319255824Human
596969566GWAS1089085_Hesterified cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS1089085 (human)3e-12esterified cholesterol measurement, intermediate density lipoprotein measurement191925582319255824Human
597218391GWAS1314465_Hintermediate density lipoprotein measurement QTL GWAS1314465 (human)1e-12free cholesterol measurementblood cholesterol level (CMO:0002280)191925582319255824Human
596969669GWAS1089188_Hlow density lipoprotein cholesterol measurement, lipid measurement QTL GWAS1089188 (human)1e-11low density lipoprotein cholesterol measurement, lipid measurement191925582319255824Human
1300034BP50_HBlood pressure QTL 50 (human)2.10.00094Blood pressuresystolic191108946337089463Human
596969670GWAS1089189_Hesterified cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS1089189 (human)2e-09esterified cholesterol measurement, low density lipoprotein cholesterol measurement191925582319255824Human
596969921GWAS1089440_Hlow density lipoprotein cholesterol measurement, phospholipid measurement QTL GWAS1089440 (human)2e-12low density lipoprotein cholesterol measurement, phospholipid measurement191925582319255824Human
407148689GWAS797665_Hlow density lipoprotein cholesterol measurement QTL GWAS797665 (human)2e-10low density lipoprotein cholesterol measurement191925582319255824Human
407150098GWAS799074_Hlow density lipoprotein cholesterol measurement QTL GWAS799074 (human)5e-12low density lipoprotein cholesterol measurement191925582319255824Human
596969667GWAS1089186_Hlow density lipoprotein cholesterol measurement QTL GWAS1089186 (human)4e-11low density lipoprotein cholesterol measurement191925582319255824Human
596970051GWAS1089570_Hesterified cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS1089570 (human)9e-09esterified cholesterol measurement, low density lipoprotein cholesterol measurement191925582319255824Human
407148956GWAS797932_Hlow density lipoprotein cholesterol measurement QTL GWAS797932 (human)2e-09esterified cholesterol measurement, low density lipoprotein cholesterol measurement191925582319255824Human
597584455GWAS1641315_Hdiabetes mellitus QTL GWAS1641315 (human)3e-13blood cholesterol amount (VT:0000180)191925582319255824Human
597187960GWAS1284034_Hfree cholesterol to total lipids in chylomicrons and extremely large VLDL percentage QTL GWAS1284034 (human)3e-13free cholesterol to total lipids in chylomicrons and extremely large VLDL percentage 191925582319255824Human
596969331GWAS1088850_Hlow density lipoprotein cholesterol measurement QTL GWAS1088850 (human)9e-11low density lipoprotein cholesterol measurement191925582319255824Human
597220336GWAS1316410_Hlow density lipoprotein cholesterol measurement QTL GWAS1316410 (human)6e-11low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)191925582319255824Human
596969340GWAS1088859_Hintermediate density lipoprotein measurement QTL GWAS1088859 (human)1e-12free cholesterol measurement191925582319255824Human
597598839GWAS1655699_Hhemoglobin measurement QTL GWAS1655699 (human)4e-18hemoglobin measurementhemoglobin measurement (CMO:0000508)191925582319255824Human
596969855GWAS1089374_Hlow density lipoprotein cholesterol measurement QTL GWAS1089374 (human)4e-12low density lipoprotein cholesterol measurement191925582319255824Human
407148975GWAS797951_Hesterified cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS797951 (human)4e-11esterified cholesterol measurement, low density lipoprotein cholesterol measurement191925582319255824Human
407149864GWAS798840_Hintermediate density lipoprotein measurement QTL GWAS798840 (human)9e-12low density lipoprotein cholesterol measurement, lipid measurement191925582319255824Human
407149226GWAS798202_Hfree cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS798202 (human)6e-09free cholesterol measurement, low density lipoprotein cholesterol measurement191925582319255824Human
597223144GWAS1319218_Hlow density lipoprotein cholesterol measurement QTL GWAS1319218 (human)1e-08low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)191925582319255824Human
597223145GWAS1319219_Hesterified cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS1319219 (human)9e-09esterified cholesterol measurement, low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)191925582319255824Human
407148982GWAS797958_Hlow density lipoprotein cholesterol measurement, lipid measurement QTL GWAS797958 (human)5e-11low density lipoprotein cholesterol measurement, lipid measurement191925582319255824Human
407149232GWAS798208_Hlow density lipoprotein cholesterol measurement QTL GWAS798208 (human)6e-11fatty acid measurement191925582319255824Human
597223148GWAS1319222_Hfree cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS1319222 (human)2e-08free cholesterol measurement, low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)191925582319255824Human
407151793GWAS800769_Hintermediate density lipoprotein measurement QTL GWAS800769 (human)3e-11intermediate density lipoprotein measurement191925582319255824Human
597223022GWAS1319096_Hlow density lipoprotein cholesterol measurement QTL GWAS1319096 (human)9e-10low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)191925582319255824Human
596969327GWAS1088846_Hlow density lipoprotein cholesterol measurement, lipid measurement QTL GWAS1088846 (human)2e-10low density lipoprotein cholesterol measurement191925582319255824Human
407149247GWAS798223_Hlow density lipoprotein cholesterol measurement QTL GWAS798223 (human)2e-11very low density lipoprotein cholesterol measurement191925582319255824Human
407151167GWAS800143_Hfree cholesterol measurement, intermediate density lipoprotein measurement QTL GWAS800143 (human)3e-08free cholesterol measurement, intermediate density lipoprotein measurement191925582319255824Human
597589600GWAS1646460_Hdiabetic eye disease QTL GWAS1646460 (human)3e-11diabetic eye diseaseblood intermediate density lipoprotein cholesterol level (CMO:0001562)191925582319255824Human
597223015GWAS1319089_Hlow density lipoprotein cholesterol measurement QTL GWAS1319089 (human)2e-10low density lipoprotein cholesterol measurementblood free fatty acids level (CMO:0000117)191925582319255824Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1641315_H GCST90479589 Diabetes / "Sugar" 16,718 African American or Afro-Caribbean cases, 38,787 African American or Afro-Caribbean controls, 8,910 Hispanic or Latin American cases, 20,404 Hispanic or Latin American controls, 1,007 East Asian ancestry cases, 2,540 East Asian ancestry controls, 80,160 European ancestry cases, 235,508 European ancestry controls C 0.9475 3E-13 12.523 rs72999033 0.1058 diabetes mellitus (EFO:0000400)
 PMID:39024449
GWAS1646460_H GCST90479882 Type 2 diabetes with ophthalmic manifestations (PheCode 250.23) 11,204 African American or Afro-Caribbean cases, 103,814 African American or Afro-Caribbean controls, 5,479 Hispanic or Latin American cases, 51,558 Hispanic or Latin American controls, 459 East Asian ancestry cases, 6,108 East Asian ancestry controls, 28,561 European ancestry cases, 402,796 European ancestry controls C 0.951 3E-11 10.523 rs72999033 0.1279 diabetic eye disease (EFO:0009486)
 PMID:39024449
GWAS1142369_H GCST007069 Red blood cell count approximately 445,000 European ancestry individuals ? NR 2E-16 15.699 rs72999033 N/A erythrocyte count (EFO:0004305)
 PMID:30595370
GWAS1655699_H GCST90475372 hemoglobin (maximum, inv-norm transformed) 407,887 European ancestry individuals C 0.9377 4E-18 17.398 rs72999033 0.04643 hemoglobin measurement (EFO:0004509)
 PMID:39024449
GWAS1209418_H GCST90002403 Red blood cell count 408,112 British individuals T 0.064312 3E-15 14.523 rs72999033 0.035705883 erythrocyte count (EFO:0004305)
 PMID:32888494
GWAS1673424_H GCST90480292 Esophageal bleeding (varices/hemorrhage) (PheCode 530.2) 996 African American or Afro-Caribbean cases, 119,714 African American or Afro-Caribbean controls, 4,672 European ancestry cases, 441,389 European ancestry controls, 896 Hispanic or Latin American cases, 58,442 Hispanic or Latin American controls C 0.9507 3E-24 23.523 rs72999033 0.3826 esophageal varices (EFO:0009545)
 PMID:39024449
GWAS1675056_H GCST90480339 Portal hypertension (PheCode 571.81) 445 African American or Afro-Caribbean cases, 120,837 African American or Afro-Caribbean controls, 2,905 European ancestry cases, 445,920 European ancestry controls, 547 Hispanic or Latin American cases, 58,958 Hispanic or Latin American controls C 0.9506 1E-20 20 rs72999033 0.4367 portal hypertension (EFO:0000666)
 PMID:39024449
GWAS1284034_H GCST90269679 Free cholesterol to total lipids in chylomicrons and extremely large VLDL percentage (UKB data field 23582) 85,701 European ancestry individuals T 0.0640043 3E-13 12.523 rs72999033 0.0707713 free cholesterol to total lipids in chylomicrons and extremely large VLDL percentage (EFO:0022277)
 PMID:36764567
GWAS1314465_H GCST90091671 Postprandial IDL particle concentration null T 0.065399356 1E-12 12 rs72999033 0.31236 intermediate density lipoprotein measurement (EFO:0008595)
 PMID:34610981
GWAS1314472_H GCST90091655 Postprandial esterified cholesterol null T 0.065611957 9E-12 11.046 rs72999033 0.301857 esterified cholesterol measurement (EFO:0008589)
 PMID:34610981
GWAS1315075_H GCST90091568 Fasting total cholesterol in medium LDL null T 0.066551659 2E-9 8.699 rs72999033 0.251897 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34610981
GWAS1315076_H GCST90091569 Fasting cholesterol esters in medium LDL null T 0.066551659 1E-9 9 rs72999033 0.253705 esterified cholesterol measurement (EFO:0008589)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34610981
GWAS1316183_H GCST90091570 Fasting free cholesterol in medium LDL null T 0.066551659 6E-9 8.222 rs72999033 0.243678 free cholesterol measurement (EFO:0008591)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34610981
GWAS1316185_H GCST90091571 Fasting total lipids in medium LDL null T 0.066551659 1E-10 10 rs72999033 0.270602 low density lipoprotein cholesterol measurement (EFO:0004611)
lipid measurement (EFO:0004529)
 PMID:34610981
GWAS1316410_H GCST90091572 Fasting medium LDL particle concentration null T 0.066551659 6E-11 10.222 rs72999033 0.274398 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34610981
None Available GCST90091672 Postprandial phospholipid levels in IDL null T 0.065429452 1E-10 10 rs72999033 0.28302 phospholipid measurement (EFO:0004639)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:34610981
None Available GCST90091675 Postprandial linoleic acid (18:2) null T 0.065550723 1E-10 10 rs72999033 0.285869 linoleic acid measurement (EFO:0006807)
 PMID:34610981
None Available GCST90091676 Postprandial total cholesterol in LDL null T 0.065399356 1E-10 10 rs72999033 0.28241 total cholesterol measurement (EFO:0004574)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34610981
None Available GCST90091667 Postprandial total cholesterol in IDL null T 0.065429452 9E-12 11.046 rs72999033 0.299814 intermediate density lipoprotein measurement (EFO:0008595)
 PMID:34610981
None Available GCST90091659 Postprandial free cholesterol null T 0.065504873 1E-12 12 rs72999033 0.314044 free cholesterol measurement (EFO:0008591)
 PMID:34610981
GWAS1317764_H GCST90091687 Postprandial total cholesterol in large LDL null T 0.065399356 4E-11 10.398 rs72999033 0.290287 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34610981
GWAS1317769_H GCST90091670 Postprandial total lipids in IDL null T 0.065399356 4E-12 11.398 rs72999033 0.304779 lipid measurement (EFO:0004529)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:34610981
GWAS1318400_H GCST90091601 Fasting small LDL particle concentration null T 0.066579805 9E-11 10.046 rs72999033 0.272103 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34610981
GWAS1318887_H GCST90091552 Fasting phospholipid levels in large LDL null T 0.066509485 1E-11 11 rs72999033 0.285545 low density lipoprotein cholesterol measurement (EFO:0004611)
phospholipid measurement (EFO:0004639)
 PMID:34610981
GWAS1319089_H GCST90091547 Fasting total cholesterol in large LDL null T 0.066509485 2E-10 9.699 rs72999033 0.265435 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34610981
GWAS1319096_H GCST90091737 Postprandial total cholesterol in small LDL null T 0.065414401 9E-10 9.046 rs72999033 0.268785 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34610981
GWAS1319218_H GCST90091597 Fasting total cholesterol in small LDL null T 0.066579805 1E-8 8 rs72999033 0.240844 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34610981
GWAS1319219_H GCST90091598 Fasting cholesterol esters in small LDL null T 0.066579805 9E-9 8.046 rs72999033 0.241147 esterified cholesterol measurement (EFO:0008589)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34610981
GWAS1319222_H GCST90091599 Fasting free cholesterol in small LDL null T 0.066579805 2E-8 7.699 rs72999033 0.237118 free cholesterol measurement (EFO:0008591)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34610981
GWAS1319277_H GCST90091550 Fasting total lipids in large LDL null T 0.066509485 5E-11 10.302 rs72999033 0.275874 low density lipoprotein cholesterol measurement (EFO:0004611)
lipid measurement (EFO:0004529)
 PMID:34610981
GWAS1319278_H GCST90091551 Fasting large LDL particle concentration null T 0.066509485 2E-11 10.699 rs72999033 0.282521 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34610981
None Available GCST90091600 Fasting total lipids in small LDL null T 0.066579805 2E-10 9.699 rs72999033 0.265605 low density lipoprotein cholesterol measurement (EFO:0004611)
lipid measurement (EFO:0004529)
 PMID:34610981
None Available GCST90091548 Fasting cholesterol esters in large LDL null T 0.066509485 4E-11 10.398 rs72999033 0.277447 esterified cholesterol measurement (EFO:0008589)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34610981
None Available GCST90091738 Postprandial cholesterol esters in small LDL null T 0.065414401 2E-9 8.699 rs72999033 0.265452 esterified cholesterol measurement (EFO:0008589)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34610981
None Available GCST90091739 Postprandial free cholesterol in small LDL null T 0.065414401 1E-10 10 rs72999033 0.281888 free cholesterol measurement (EFO:0008591)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34610981
None Available GCST90091740 Postprandial total lipids in small LDL null T 0.065414401 9E-12 11.046 rs72999033 0.299619 low density lipoprotein cholesterol measurement (EFO:0004611)
lipid measurement (EFO:0004529)
 PMID:34610981
None Available GCST90091741 Postprandial small LDL particle concentration null T 0.065414401 4E-12 11.398 rs72999033 0.305227 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34610981
None Available GCST90091729 Postprandial saturated fatty acids null T 0.065492477 6E-11 10.222 rs72999033 0.290112 fatty acid measurement (EFO:0005110)
 PMID:34610981
None Available GCST90091512 Fasting esterified cholesterol null T 0.06665774 5E-11 10.302 rs72999033 0.276108 esterified cholesterol measurement (EFO:0008589)
 PMID:34610981
GWAS1321684_H GCST90091688 Postprandial cholesterol esters in large LDL null T 0.065399356 3E-12 11.523 rs72999033 0.306519 esterified cholesterol measurement (EFO:0008589)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34610981
None Available GCST90091690 Postprandial total lipids in large LDL null T 0.065399356 1E-11 11 rs72999033 0.298303 low density lipoprotein cholesterol measurement (EFO:0004611)
lipid measurement (EFO:0004529)
 PMID:34610981
None Available GCST90091708 Postprandial total cholesterol in medium LDL null T 0.065414401 2E-10 9.699 rs72999033 0.27997 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34610981
None Available GCST90091709 Postprandial cholesterol esters in medium LDL null T 0.065414401 2E-10 9.699 rs72999033 0.278971 esterified cholesterol measurement (EFO:0008589)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34610981
None Available GCST90091710 Postprandial free cholesterol in medium LDL null T 0.065414401 1E-10 10 rs72999033 0.281511 free cholesterol measurement (EFO:0008591)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34610981
None Available GCST90091711 Postprandial total lipids in medium LDL null T 0.065414401 9E-12 11.046 rs72999033 0.299278 low density lipoprotein cholesterol measurement (EFO:0004611)
lipid measurement (EFO:0004529)
 PMID:34610981
GWAS1322077_H GCST90091712 Postprandial medium LDL particle concentration null T 0.065414401 5E-12 11.302 rs72999033 0.30283 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34610981
GWAS1322728_H GCST90091526 Fasting total cholesterol in IDL null T 0.066474075 3E-11 10.523 rs72999033 0.278231 intermediate density lipoprotein measurement (EFO:0008595)
 PMID:34610981
None Available GCST90091527 Fasting cholesterol esters in IDL null T 0.066474075 3E-12 11.523 rs72999033 0.292593 esterified cholesterol measurement (EFO:0008589)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:34610981
None Available GCST90091691 Postprandial large LDL particle concentration null T 0.065399356 4E-12 11.398 rs72999033 0.304556 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34610981
GWAS1324198_H GCST90091692 Postprandial phospholipid levels in large LDL null T 0.065399356 2E-12 11.699 rs72999033 0.307618 low density lipoprotein cholesterol measurement (EFO:0004611)
phospholipid measurement (EFO:0004639)
 PMID:34610981
GWAS1340234_H GCST90091528 Fasting free cholesterol in IDL null T 0.066474075 3E-8 7.523 rs72999033 0.231697 free cholesterol measurement (EFO:0008591)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:34610981
GWAS1340235_H GCST90091529 Fasting total lipids in IDL null T 0.066509485 6E-12 11.222 rs72999033 0.288229 lipid measurement (EFO:0004529)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:34610981
None Available GCST90091530 Fasting IDL particle concentration null T 0.066509485 2E-12 11.699 rs72999033 0.295657 intermediate density lipoprotein measurement (EFO:0008595)
 PMID:34610981
None Available GCST90091536 Fasting total cholesterol in LDL null T 0.066509485 1E-9 9 rs72999033 0.255349 total cholesterol measurement (EFO:0004574)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34610981
GWAS1340834_H GCST90091531 Fasting phospholipid levels in IDL null T 0.066474075 7E-11 10.155 rs72999033 0.274021 phospholipid measurement (EFO:0004639)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:34610981
None Available GCST90091534 Fasting linoleic acid (18:2) null T 0.066481233 2E-10 9.699 rs72999033 0.268507 linoleic acid measurement (EFO:0006807)
 PMID:34610981
None Available GCST90091635 Fasting total cholesterol in very small VLDL null T 0.066537489 2E-11 10.699 rs72999033 0.282147 PMID:34610981
None Available GCST90091637 Fasting free cholesterol in very small VLDL null T 0.066537489 1E-12 12 rs72999033 0.297748 free cholesterol measurement (EFO:0008591)
 PMID:34610981
None Available GCST90002367 Red blood cell count 727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals T 0.0503084 5E-16 15.302 rs72999033 N/A PMID:32888493
GWAS1693080_H GCST90132689 Total cholesterol levels in medium VLDL 21,551 European ancestry individuals T 0.06 1E-16 16 rs72999033 0.18 total cholesterol measurement (EFO:0004574)
 PMID:27005778
None Available GCST90302008 Total cholesterol to total lipids ratio in large LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.0628 2E-16 15.699 rs72999033 0.0706 cholesterol:total lipids ratio (EFO:0020943)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:38448586
GWAS1379335_H GCST90018950 C-reactive protein 353,466 European ancestry individuals, 83,025 East Asian ancestry individuals T NR 1E-19 19 rs72999033 0.0441 C-reactive protein measurement (EFO:0004458)
 PMID:34594039
None Available GCST90302044 Total cholesterol to total lipids ratio in medium LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.0628 1E-10 10 rs72999033 0.0549 cholesterol:total lipids ratio (EFO:0020943)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:38448586
GWAS1379804_H GCST90302046 Cholesteryl esters to total lipids ratio in medium LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.0628 2E-22 21.699 rs72999033 0.0832 low density lipoprotein cholesterol measurement (EFO:0004611)
cholesteryl esters:total lipids ratio (EFO:0020944)
 PMID:38448586
None Available GCST90302092 Total cholesterol to total lipids ratio in small LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.0628 1E-9 9 rs72999033 0.0517 cholesterol:total lipids ratio (EFO:0020943)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:38448586
GWAS1385930_H GCST90302094 Cholesteryl esters to total lipids ratio in small LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.0628 3E-19 18.523 rs72999033 0.0765 cholesterol:total lipids ratio (EFO:0020943)
cholesteryl esters:total lipids ratio (EFO:0020944)
 PMID:38448586
GWAS1388290_H GCST90024028 Ceramide (d16:1/24:1) levels 4,492 European ancestry individuals T NR 0.000005 5.302 rs72999033 0.201 ceramide measurement (EFO:0010222)
 PMID:35668104
None Available GCST90018960 Hematocrit 350,475 European ancestry individuals, 153,015 East Asian ancestry individuals T NR 7E-11 10.155 rs72999033 0.0255 hematocrit (EFO:0004348)
 PMID:34594039
GWAS1389915_H GCST90024046 Ceramide (d18:1/24:0) levels 4,492 European ancestry individuals T NR 0.000002 5.699 rs72999033 0.209 ceramide measurement (EFO:0010222)
 PMID:35668104
GWAS1393500_H GCST90024578 Total Ceramide levels 4,492 European ancestry individuals T NR 3E-7 6.523 rs72999033 0.223 ceramide measurement (EFO:0010222)
 PMID:35668104
GWAS1408004_H GCST90018989 Medication use (HMG CoA reductase inhibitors) 73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls T NR 2E-26 25.699 rs72999033 0.1212 HMG CoA reductase inhibitor use measurement (EFO:0009932)
 PMID:34594039
None Available GCST90475523 mean platelet volume (MPV, minimum, inv-norm transformed) 335,593 European ancestry individuals C 0.9376 3E-21 20.523 rs72999033 0.06217 PMID:39024449
None Available GCST90475520 mean platelet volume (MPV, mean, inv-norm transformed) 335,593 European ancestry individuals C 0.9376 3E-27 26.523 rs72999033 0.07234 PMID:39024449
Database Acc Id Source(s)
GWAS Catalog GCST90091527 GWAS Catalog
  GCST90091688 GWAS Catalog

RGD Curation Notes
Note Type Note Reference