GWAS796386_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS796386_H (fructose measurement, glucose measurement, galactose measurement QTL GWAS796386 (human)) Homo sapiens

Symbol: GWAS796386_H
Name: fructose measurement, glucose measurement, galactose measurement QTL GWAS796386 (human)
RGD ID: 407147410
Trait: fructose absorption trait   (VT:0001668)    
Measurement Type: blood glucose level   (CMO:0000046)    
LOD Score: Not Available
P Value: 9.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381229,152,866 - 29,152,867RGD_MAPPER_PIPELINEGRCh38
GRCh371229,305,799 - 29,305,800RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS796386_HHumanblood glucose level  IAGPrs10843330405850206Based on the EFO term IDGWAS_CATALOGPMID:23823483

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS796386_HHumanfructose absorption trait  IAGPrs10843330405850206Based on the EFO term IDGWAS_CATALOGPMID:23823483

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS796386_HHumanfructose measurement  IAGPrs10843330405850206 GWAS_CATALOGPMID:23823483
GWAS796386_HHumangalactose measurement  IAGPrs10843330405850206 GWAS_CATALOGPMID:23823483
GWAS796386_HHumanglucose measurement  IAGPrs10843330405850206 GWAS_CATALOGPMID:23823483
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Vertebrate Trait

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1344680FAR2fatty acyl-CoA reductase 2122914927829335616Human

Position Markers

Peak: (rs10843330)
Human AssemblyChrPosition (strand)Source
GRCh381229,152,866 - 29,152,867RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407147410GWAS796386_Hfructose measurement, glucose measurement, galactose measurement QTL GWAS796386 (human)0.0000009fructose absorption trait (VT:0001668)blood glucose level (CMO:0000046)122915286629152867Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS796386_H GCST009391 Metabolite levels 2,076 European ancestry individuals ? NR 9E-7 6.046 rs10843330 0.29541168 fructose measurement (EFO:0010477)
glucose measurement (EFO:0004468)
galactose measurement (EFO:0010481)
 PMID:23823483
Database Acc Id Source(s)
GWAS Catalog GCST009391 GWAS Catalog

RGD Curation Notes
Note Type Note Reference