GWAS791289_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS791289_H (very low density lipoprotein cholesterol measurement, esterified cholesterol measurement QTL GWAS791289 (human)) Homo sapiens

Symbol: GWAS791289_H
Name: very low density lipoprotein cholesterol measurement, esterified cholesterol measurement QTL GWAS791289 (human)
RGD ID: 407142313
Trait: very low density lipoprotein cholesterol measurement, esterified cholesterol measurement
Measurement Type: blood very low density lipoprotein cholesterol level   (CMO:0000648)    
LOD Score: Not Available
P Value: 2.0E-14
Variance: Not Available
Position No map positions available.
Population Stats: Not Available



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS791289_HHumanblood very low density lipoprotein cholesterol level  IAGPrs17135401405850206Based on the EFO term IDGWAS_CATALOGPMID:38448586

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS791289_HHumanesterified cholesterol measurement  IAGPrs17135401405850206 GWAS_CATALOGPMID:38448586
GWAS791289_HHumanvery low density lipoprotein cholesterol measurement  IAGPrs17135401405850206 GWAS_CATALOGPMID:38448586
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs17135401) No map positions available.


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
None Available GCST90302108 Free cholesterol in small VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals C 0.9318 4E-10 9.398 rs17135401 0.049 free cholesterol in small VLDL measurement (EFO:0022272)
 PMID:38448586
None Available GCST90302110 Total lipids in small VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals C 0.9318 6E-10 9.222 rs17135401 0.0486 total lipids in small VLDL (EFO:0022148)
 PMID:38448586
None Available GCST90302106 Cholesterol esters in small VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals C 0.9318 2E-14 13.699 rs17135401 0.0599 very low density lipoprotein cholesterol measurement (EFO:0008317)
esterified cholesterol measurement (EFO:0008589)
 PMID:38448586
None Available GCST90302123 Total cholesterol levels in VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals C 0.9318 2E-10 9.699 rs17135401 0.0496 total cholesterol measurement (EFO:0004574)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:38448586
None Available GCST90301947 Ratio of apolipoprotein B to apolipoprotein A1 levels 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals C 0.9318 1E-17 17 rs17135401 0.0675 apolipoprotein A 1 measurement (EFO:0004614)
apolipoprotein B measurement (EFO:0004615)
 PMID:38448586
None Available GCST90301999 Free cholesterol in large HDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals C 0.9318 3E-15 14.523 rs17135401 0.0628 free cholesterol in large HDL measurement (EFO:0022157)
 PMID:38448586
None Available GCST90302133 Concentration of very large HDL particles 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals C 0.9318 1E-10 10 rs17135401 0.0514 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:38448586
None Available GCST90302112 Phospholipids in small VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals C 0.9318 8E-11 10.097 rs17135401 0.0511 phospholipids in VLDL measurement (EFO:0022301)
 PMID:38448586
None Available GCST90302104 Total cholesterol in small VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals C 0.9318 1E-13 13 rs17135401 0.0577 total cholesterol in small VLDL (EFO:0022171)
 PMID:38448586
Database Acc Id Source(s)
GWAS Catalog GCST90302106 GWAS Catalog

RGD Curation Notes
Note Type Note Reference