GWAS763068_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS763068_H (protein measurement QTL GWAS763068 (human)) Homo sapiens

Symbol: GWAS763068_H
Name: protein measurement QTL GWAS763068 (human)
RGD ID: 407114092
Trait: protein measurement
LOD Score: Not Available
P Value: 7.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38117,798,778 - 17,798,779RGD_MAPPER_PIPELINEGRCh38
GRCh37118,125,273 - 18,125,274RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS763068_HHumanprotein measurement  IAGPrs115669506405850206 GWAS_CATALOGPMID:32778093
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1602092ACTL8actin like 811775533317827063Human

Position Markers

Peak: (rs115669506)
Human AssemblyChrPosition (strand)Source
GRCh38117,798,778 - 17,798,779RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
407114516GWAS763492_Hprotein measurement QTL GWAS763492 (human)3e-08protein measurement11779877817798779Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
407064674GWAS713650_Hprotein measurement QTL GWAS713650 (human)4e-09protein measurement11779877817798779Human
407047092GWAS696068_Hprotein measurement QTL GWAS696068 (human)2e-08protein measurement11779877817798779Human
407114092GWAS763068_Hprotein measurement QTL GWAS763068 (human)7e-09protein measurement11779877817798779Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
407110267GWAS759243_Hprotein measurement QTL GWAS759243 (human)3e-11protein measurement11779877817798779Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS696068_H GCST011427 Protein quantitative trait loci (liver) 172 European ancestry individuals, 29 Black individuals, 86 individuals C 0.0122 2E-8 7.699 rs115669506 0.8034 protein measurement (EFO:0004747)
 PMID:32778093
GWAS713650_H GCST011427 Protein quantitative trait loci (liver) 172 European ancestry individuals, 29 Black individuals, 86 individuals C 0.0122 4E-9 8.398 rs115669506 0.02733 protein measurement (EFO:0004747)
 PMID:32778093
GWAS759243_H GCST011427 Protein quantitative trait loci (liver) 172 European ancestry individuals, 29 Black individuals, 86 individuals C 0.0122 3E-11 10.523 rs115669506 0.05965 protein measurement (EFO:0004747)
 PMID:32778093
GWAS763068_H GCST011427 Protein quantitative trait loci (liver) 172 European ancestry individuals, 29 Black individuals, 86 individuals C 0.0122 7E-9 8.155 rs115669506 0.09525 protein measurement (EFO:0004747)
 PMID:32778093
GWAS763492_H GCST011427 Protein quantitative trait loci (liver) 172 European ancestry individuals, 29 Black individuals, 86 individuals C 0.0122 3E-8 7.523 rs115669506 0.03409 protein measurement (EFO:0004747)
 PMID:32778093
None Available GCST011427 Protein quantitative trait loci (liver) 172 European ancestry individuals, 29 Black individuals, 86 individuals C 0.0122 2E-8 7.699 rs115669506 0.05027 protein measurement (EFO:0004747)
 PMID:32778093
Database Acc Id Source(s)
GWAS Catalog GCST011427 GWAS Catalog

RGD Curation Notes
Note Type Note Reference