GWAS759024_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS759024_H (electrocardiography QTL GWAS759024 (human)) Homo sapiens

Symbol: GWAS759024_H
Name: electrocardiography QTL GWAS759024 (human)
RGD ID: 407110048
Trait: electrocardiography
LOD Score: Not Available
P Value: 1.0E-21
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3816,219,310 - 6,219,311RGD_MAPPER_PIPELINEGRCh38
GRCh3716,279,370 - 6,279,371RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS759024_HHumanelectrocardiography  IAGPrs846111405850206 GWAS_CATALOGPMID:32916098
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1603826RNF207ring finger protein 207162061196221299Human

Position Markers

Peak: (rs846111)
Human AssemblyChrPosition (strand)Source
GRCh3816,219,310 - 6,219,311RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
406991426GWAS640402_HQT interval QTL GWAS640402 (human)2e-11QT intervalQT interval (CMO:0000235)162193106219311Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
406959058GWAS608034_Helectrocardiography QTL GWAS608034 (human)2e-36electrocardiography162193106219311Human
407027033GWAS676009_HQT interval QTL GWAS676009 (human)4e-16QT intervalQT interval (CMO:0000235)162193106219311Human
407021411GWAS670387_HQT interval QTL GWAS670387 (human)1e-16QT intervalQT interval (CMO:0000235)162193106219311Human
407099490GWAS748466_Helectrocardiography QTL GWAS748466 (human)4e-13electrocardiography162193106219311Human
407099489GWAS748465_Helectrocardiography QTL GWAS748465 (human)7e-14electrocardiography162193106219311Human
407099488GWAS748464_Helectrocardiography QTL GWAS748464 (human)6e-13electrocardiography162193106219311Human
407315461GWAS964437_HJT interval QTL GWAS964437 (human)2e-202JT intervalheart electrical conduction measurement (CMO:0000230)162193106219311Human
407315589GWAS964565_HQT interval QTL GWAS964565 (human)3e-186QT intervalQT interval (CMO:0000235)162193106219311Human
407164417GWAS813393_HQT interval QTL GWAS813393 (human)8e-18QT intervalQT interval (CMO:0000235)162193106219311Human
407099787GWAS748763_Helectrocardiography QTL GWAS748763 (human)3e-12electrocardiography162193106219311Human
407099786GWAS748762_Helectrocardiography QTL GWAS748762 (human)5e-09electrocardiography162193106219311Human
407099791GWAS748767_Helectrocardiography QTL GWAS748767 (human)2e-17electrocardiography162193106219311Human
407208841GWAS857817_Hhypertrophic cardiomyopathy QTL GWAS857817 (human)0.0000006hypertrophic cardiomyopathy162193106219311Human
407099790GWAS748766_Helectrocardiography QTL GWAS748766 (human)8e-17electrocardiography162193106219311Human
407099789GWAS748765_Helectrocardiography QTL GWAS748765 (human)2e-15electrocardiography162193106219311Human
407099788GWAS748764_Helectrocardiography QTL GWAS748764 (human)9e-15electrocardiography162193106219311Human
407099795GWAS748771_Helectrocardiography QTL GWAS748771 (human)4e-21electrocardiography162193106219311Human
407099794GWAS748770_Helectrocardiography QTL GWAS748770 (human)3e-21electrocardiography162193106219311Human
407019152GWAS668128_Helectrocardiography QTL GWAS668128 (human)1e-11electrocardiography162193106219311Human
407099793GWAS748769_Helectrocardiography QTL GWAS748769 (human)2e-19electrocardiography162193106219311Human
407099792GWAS748768_Helectrocardiography QTL GWAS748768 (human)9e-18electrocardiography162193106219311Human
407110039GWAS759015_Helectrocardiography QTL GWAS759015 (human)5e-25electrocardiography162193106219311Human
407099799GWAS748775_Helectrocardiography QTL GWAS748775 (human)3e-22electrocardiography162193106219311Human
407099798GWAS748774_Helectrocardiography QTL GWAS748774 (human)7e-22electrocardiography162193106219311Human
407109778GWAS758754_Helectrocardiography QTL GWAS758754 (human)2e-24electrocardiography162193106219311Human
407099797GWAS748773_Helectrocardiography QTL GWAS748773 (human)2e-21electrocardiography162193106219311Human
407099796GWAS748772_Helectrocardiography QTL GWAS748772 (human)7e-21electrocardiography162193106219311Human
407110044GWAS759020_Helectrocardiography QTL GWAS759020 (human)1e-24electrocardiography162193106219311Human
407110045GWAS759021_Helectrocardiography QTL GWAS759021 (human)8e-25electrocardiography162193106219311Human
407110046GWAS759022_Helectrocardiography QTL GWAS759022 (human)2e-23electrocardiography162193106219311Human
407099800GWAS748776_Helectrocardiography QTL GWAS748776 (human)8e-23electrocardiography162193106219311Human
407110047GWAS759023_Helectrocardiography QTL GWAS759023 (human)2e-22electrocardiography162193106219311Human
407110040GWAS759016_Helectrocardiography QTL GWAS759016 (human)1e-25electrocardiography162193106219311Human
407119129GWAS768105_Helectrocardiography QTL GWAS768105 (human)2e-09electrocardiography162193106219311Human
407110041GWAS759017_Helectrocardiography QTL GWAS759017 (human)2e-26electrocardiography162193106219311Human
407030172GWAS679148_Helectrocardiography QTL GWAS679148 (human)2e-38electrocardiography162193106219311Human
407038876GWAS687852_HQT interval QTL GWAS687852 (human)7e-40QT intervalQT interval (CMO:0000235)162193106219311Human
407119130GWAS768106_Helectrocardiography QTL GWAS768106 (human)4e-08electrocardiography162193106219311Human
407110042GWAS759018_Helectrocardiography QTL GWAS759018 (human)5e-27electrocardiography162193106219311Human
407110043GWAS759019_Helectrocardiography QTL GWAS759019 (human)3e-26electrocardiography162193106219311Human
407110052GWAS759028_Helectrocardiography QTL GWAS759028 (human)7e-15electrocardiography162193106219311Human
407110053GWAS759029_Helectrocardiography QTL GWAS759029 (human)1e-13electrocardiography162193106219311Human
407110054GWAS759030_Helectrocardiography QTL GWAS759030 (human)1e-12electrocardiography162193106219311Human
407110048GWAS759024_Helectrocardiography QTL GWAS759024 (human)1e-21electrocardiography162193106219311Human
407110049GWAS759025_Helectrocardiography QTL GWAS759025 (human)2e-20electrocardiography162193106219311Human
407110050GWAS759026_Helectrocardiography QTL GWAS759026 (human)4e-18electrocardiography162193106219311Human
407110051GWAS759027_Helectrocardiography QTL GWAS759027 (human)3e-16electrocardiography162193106219311Human
407164715GWAS813691_HQT interval QTL GWAS813691 (human)7e-25QT intervalQT interval (CMO:0000235)162193106219311Human
407100987GWAS749963_Helectrocardiography QTL GWAS749963 (human)2e-25electrocardiography162193106219311Human
407110330GWAS759306_Helectrocardiography QTL GWAS759306 (human)8e-12electrocardiography162193106219311Human
406899903GWAS548879_Hheart failure QTL GWAS548879 (human)6e-09heart failure162193106219311Human
407110331GWAS759307_Helectrocardiography QTL GWAS759307 (human)1e-10electrocardiography162193106219311Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS548879_H GCST90239776 Heart failure (multivariate analysis) 17,917 African ancestry individuals, 4,293 admixed ancestry individuals, 47,934 East Asian ancestry individuals, 343,120 European ancestry individuals ? NR 6E-9 8.222 rs846111 0.01549684 heart failure (EFO:0003144)
 PMID:36376295
GWAS608034_H GCST90250896 ECG cardiac MRI latent space 37,774 European ancestry individuals ? NR 2E-36 35.699 rs846111 N/A electrocardiography (EFO:0004327)
 PMID:37105979
GWAS640402_H GCST008043 QT interval 3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals ? NR 2E-11 10.699 rs846111 1.919251 QT interval (EFO:0004682)
 PMID:31217584
GWAS668128_H GCST011010 Electrocardiographic traits (multivariate) 17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals ? NR 1E-11 11 rs846111 N/A electrocardiography (EFO:0004327)
 PMID:32602732
GWAS670387_H GCST000363 QT interval 13,685 European ancestry individuals C 0.28 1E-16 16 rs846111 1.75 QT interval (EFO:0004682)
 PMID:19305408
GWAS676009_H GCST000364 QT interval 15,842 European ancestry individuals C 0.29 4E-16 15.398 rs846111 1.49 QT interval (EFO:0004682)
 PMID:19305409
GWAS679148_H GCST90250897 ECG latent space 38,686 European ancestry individuals ? NR 2E-38 37.699 rs846111 N/A electrocardiography (EFO:0004327)
 PMID:37105979
GWAS687852_H GCST002500 QT interval Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals C 0.283 7E-40 39.155 rs846111 1.73 QT interval (EFO:0004682)
 PMID:24952745
GWAS748464_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 6E-13 12.222 rs846111 0.0454938 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS748465_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 7E-14 13.155 rs846111 0.0469712 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS748466_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 4E-13 12.398 rs846111 0.0450025 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS748762_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 5E-9 8.302 rs846111 0.0336025 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS748763_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 3E-12 11.523 rs846111 0.0415726 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS748764_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 9E-15 14.046 rs846111 0.0463194 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS748765_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 2E-15 14.699 rs846111 0.0480106 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS748766_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 8E-17 16.097 rs846111 0.0505558 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS748767_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 2E-17 16.699 rs846111 0.0513601 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS748768_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 9E-18 17.046 rs846111 0.0513448 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS748769_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 2E-19 18.699 rs846111 0.0540143 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS748770_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 3E-21 20.523 rs846111 0.0572957 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS748771_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 4E-21 20.398 rs846111 0.0564451 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS748772_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 7E-21 20.155 rs846111 0.0561008 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS748773_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 2E-21 20.699 rs846111 0.0573964 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS748774_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 7E-22 21.155 rs846111 0.0585699 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS748775_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 3E-22 21.523 rs846111 0.0589435 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS748776_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 8E-23 22.097 rs846111 0.0596476 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS749963_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 2E-25 24.699 rs846111 0.0647814 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS758754_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 2E-24 23.699 rs846111 0.0618096 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS759015_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 5E-25 24.302 rs846111 0.0630265 electrocardiography (EFO:0004327)
 PMID:32916098
None Available GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 2E-25 24.699 rs846111 0.0635616 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS759016_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 1E-25 25 rs846111 0.0643005 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS759017_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 2E-26 25.699 rs846111 0.0654603 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS759018_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 5E-27 26.302 rs846111 0.0662487 electrocardiography (EFO:0004327)
 PMID:32916098
None Available GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 2E-26 25.699 rs846111 0.0656379 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS759019_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 3E-26 25.523 rs846111 0.0654916 electrocardiography (EFO:0004327)
 PMID:32916098
None Available GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 1E-25 25 rs846111 0.0650066 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS759020_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 1E-24 24 rs846111 0.0638731 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS759021_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 8E-25 24.097 rs846111 0.0639078 electrocardiography (EFO:0004327)
 PMID:32916098
None Available GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 5E-25 24.302 rs846111 0.064072 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS759022_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 2E-23 22.699 rs846111 0.0620698 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS759023_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 2E-22 21.699 rs846111 0.0609696 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS759024_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 1E-21 21 rs846111 0.0598545 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS759025_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 2E-20 19.699 rs846111 0.0581626 electrocardiography (EFO:0004327)
 PMID:32916098
None Available GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 2E-19 18.699 rs846111 0.0566806 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS759026_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 4E-18 17.398 rs846111 0.0547149 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS759027_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 3E-16 15.523 rs846111 0.0518554 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS759028_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 7E-15 14.155 rs846111 0.0495789 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS759029_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 1E-13 13 rs846111 0.0472714 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS759030_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 1E-12 12 rs846111 0.0453628 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS759306_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 8E-12 11.097 rs846111 0.0435038 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS759307_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 1E-10 10 rs846111 0.0410812 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS768105_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 2E-9 8.699 rs846111 0.0379992 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS768106_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 4E-8 7.398 rs846111 0.0348447 electrocardiography (EFO:0004327)
 PMID:32916098
None Available GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 5E-27 26.302 rs846111 0.0661157 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS813393_H GCST90026651 QT interval 24,495 European ancestry men G 0.73 8E-18 17.097 rs846111 0.057 QT interval (EFO:0004682)
 PMID:34274964
GWAS813691_H GCST90026652 QT interval 27,612 European ancestry women G 0.73 7E-25 24.155 rs846111 0.067 QT interval (EFO:0004682)
 PMID:34274964
GWAS857817_H GCST012099 Hypertrophic cardiomyopathy (sarcomere negative) 170 African ancestry cases, 93 Hispanic/Latino cases, 52 East Asian ancestry cases, 1,444 European ancestry cases, 94 South Asian ancestry cases, 21 cases, 738 African ancestry controls, 78 Hispanic/Latino controls, 212 East Asian ancestry controls, 24,161 European ancestry controls, 1,132 South Asian ancestry controls, 1,023 controls G 0.73309 6E-7 6.222 rs846111 0.255081 hypertrophic cardiomyopathy (EFO:0000538)
 PMID:33495597
GWAS964437_H GCST90179157 JT interval 252,730 European ancestry, African ancestry, Hispanic or Latin American, South East Asian ancestry, South Asian ancestry individuals C 0.262 2E-202 201.699 rs846111 0.1039 JT interval (EFO:0007885)
 PMID:36050321
GWAS964565_H GCST90179153 QT interval 252,730 European ancestry, African ancestry, Hispanic or Latin American, South East Asian ancestry, South Asian ancestry individuals C 0.2627 3E-186 185.523 rs846111 0.0991 QT interval (EFO:0004682)
 PMID:36050321
Database Acc Id Source(s)
GWAS Catalog GCST010796 GWAS Catalog

RGD Curation Notes
Note Type Note Reference